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Tery_0311 Tery_0311 Tery_1138 Tery_1138 Tery_2092 Tery_2092 Tery_2349 Tery_2349 Tery_2406 Tery_2406 rlpA rlpA Tery_3529 Tery_3529 Tery_3734 Tery_3734 Tery_3869 Tery_3869 Tery_4518 Tery_4518
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Tery_0311PFAM: OmpA/MotB; KEGG: cyb:CYB_2329 OmpA family protein. (246 aa)
Tery_1138C-terminal processing peptidase-2. Serine peptidase. MEROPS family S41A; KEGG: ava:Ava_3440 peptidase S41A; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF peptidase S41; Belongs to the peptidase S41A family. (412 aa)
Tery_2092PFAM: Lytic transglycosylase, catalytic Tetratricopeptide TPR_2; KEGG: ana:alr1112 probable transglycosylase. (720 aa)
Tery_2349TPR repeat; PFAM: peptidase S1 and S6, chymotrypsin/Hap TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: pmt:PMT0296 TPR repeat. (649 aa)
Tery_2406C-terminal processing peptidase-2. Serine peptidase. MEROPS family S41A; KEGG: ana:all1738 carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF peptidase S41; Belongs to the peptidase S41A family. (434 aa)
rlpARare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides. (342 aa)
Tery_3529PFAM: TPR repeat protein of unknown function DUF323 Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: ana:all3226 hypothetical protein. (929 aa)
Tery_3734PFAM: OmpA/MotB; KEGG: cho:Chro.20329 hypothetical protein. (302 aa)
Tery_3869PFAM: WD-40 repeat peptidase C14, caspase catalytic subunit p20; KEGG: mba:Mbar_A2862 WD40-repeat containing protein. (1553 aa)
Tery_4518C-terminal processing peptidase-2. Serine peptidase. MEROPS family S41A; KEGG: ana:all2500 carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF peptidase S41; Belongs to the peptidase S41A family. (430 aa)
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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