STRINGSTRING
rnhB rnhB Tery_0538 Tery_0538 Tery_0838 Tery_0838 Tery_1234 Tery_1234 Tery_2021 Tery_2021 Tery_2022 Tery_2022 Tery_2222 Tery_2222 Tery_2272 Tery_2272 Tery_3228 Tery_3228 lpxC lpxC fabZ fabZ lpxA lpxA lpxB lpxB Tery_4466 Tery_4466 lpxD lpxD Tery_4965 Tery_4965
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rnhBRNase HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family. (211 aa)
Tery_0538PFAM: permease YjgP/YjgQ; KEGG: ana:alr4069 hypothetical protein. (392 aa)
Tery_0838PFAM: S-layer-like region Carbohydrate-selective porin OprB; KEGG: ana:alr2231 hypothetical protein; Belongs to the OprB family. (550 aa)
Tery_1234PFAM: S-layer-like region Carbohydrate-selective porin OprB; KEGG: ava:Ava_2510 S-layer region-like; Belongs to the OprB family. (639 aa)
Tery_2021Resolvase, RNase H-like fold; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. (133 aa)
Tery_2022KEGG: ava:Ava_3282 hypothetical protein. (197 aa)
Tery_2222KEGG: syf:Synpcc7942_0676 hypothetical protein. (398 aa)
Tery_2272PFAM: ABC transporter related; SMART: ATPase; KEGG: ava:Ava_1638 ABC transporter-like. (242 aa)
Tery_3228KEGG: ana:alr4005 putative lipid-A-disaccharide synthase. (482 aa)
lpxCUDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the LpxC family. (301 aa)
fabZ3-hydroxyacyl-[acyl-carrier-protein] dehydratase; Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs. (174 aa)
lpxAacyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. (275 aa)
lpxBlipid-A-disaccharide synthase; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. (413 aa)
Tery_4466PFAM: S-layer-like region Carbohydrate-selective porin OprB; KEGG: ana:alr2231 hypothetical protein; Belongs to the OprB family. (491 aa)
lpxDUDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily. (345 aa)
Tery_4965KEGG: ava:Ava_2166 hypothetical protein. (453 aa)
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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