STRINGSTRING
cofG cofG Tery_0739 Tery_0739 Tery_0920 Tery_0920 Tery_1167 Tery_1167 cofH cofH Tery_2243 Tery_2243 Tery_4817 Tery_4817 Tery_4818 Tery_4818 Tery_5013 Tery_5013 Tery_5014 Tery_5014 Tery_5017 Tery_5017
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
cofGFO synthase subunit 1; Catalyzes the radical-mediated synthesis of 7,8-didemethyl-8- hydroxy-5-deazariboflavin from 5-amino-5-(4-hydroxybenzyl)-6-(D- ribitylimino)-5,6-dihydrouracil. (319 aa)
Tery_0739Serine phosphatase; PFAM: Stage II sporulation E; SMART: Protein phosphatase 2C-like; KEGG: ana:all1758 hypothetical protein. (474 aa)
Tery_0920Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: ava:Ava_3722 anti-sigma-factor antagonist (STAS) domain protein. (115 aa)
Tery_1167Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: ava:Ava_4580 anti-sigma-factor antagonist (STAS) domain protein. (127 aa)
cofHFO synthase subunit 2; Catalyzes the radical-mediated synthesis of 5-amino-5-(4- hydroxybenzyl)-6-(D-ribitylimino)-5,6-dihydrouracil from 5-amino-6-(D- ribitylamino)uracil and L-tyrosine. (398 aa)
Tery_2243KEGG: ava:Ava_3633 putative anti-sigma regulatory factor (Ser/Thr protein kinase). (159 aa)
Tery_4817PFAM: response regulator receiveR GAF Stage II sporulation E; SMART: Protein phosphatase 2C-like; KEGG: ana:all1703 two-component response regulator. (553 aa)
Tery_4818Putative anti-sigma regulatory factor, serine/threonine protein kinase; PFAM: ATP-binding region, ATPase-like; KEGG: ana:all1702 anti-sigma B factor. (140 aa)
Tery_5013Putative anti-sigma regulatory factor, serine/threonine protein kinase; KEGG: syn:slr1861 Rsb/Spo-like protein kinase. (141 aa)
Tery_5014Serine phosphatase; PFAM: GAF Stage II sporulation E; SMART: Protein phosphatase 2C-like; KEGG: syn:slr1983 two-component response regulator. (459 aa)
Tery_5017Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: syn:slr1856 phosphoprotein substrate of icfG gene cluster; Belongs to the anti-sigma-factor antagonist family. (119 aa)
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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