STRINGSTRING
Tery_0733 Tery_0733 Tery_0911 Tery_0911 Tery_1605 Tery_1605 Tery_1606 Tery_1606 Tery_1607 Tery_1607 Tery_1609 Tery_1609 Tery_1745 Tery_1745 Tery_1747 Tery_1747 Tery_1748 Tery_1748 Tery_1870 Tery_1870 Tery_2388 Tery_2388 Tery_2683 Tery_2683 Tery_2933 Tery_2933 Tery_3864 Tery_3864 Tery_4117 Tery_4117 Tery_4118 Tery_4118 Tery_4119 Tery_4119 Tery_4672 Tery_4672 Tery_4765 Tery_4765
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Tery_0733PFAM: protein of unknown function UPF0102; KEGG: ava:Ava_4800 protein of unknown function UPF0102; Belongs to the UPF0102 family. (180 aa)
Tery_0911KEGG: ava:Ava_0976 hypothetical protein. (255 aa)
Tery_1605TIGRFAM: type IV pilus assembly protein PilM; KEGG: syn:slr1274 pilus assembly protein, membrane protein, required for motility. (365 aa)
Tery_1606PFAM: Fimbrial assembly; KEGG: ana:alr1029 type IV pilus assembly protein PilN. (271 aa)
Tery_1607KEGG: ana:alr1030 type IV pilus assembly protein PilO. (264 aa)
Tery_1609PFAM: type II and III secretion system protein NolW-like Secretin/TonB, short N-terminal; KEGG: ava:Ava_3689 type II and III secretion system protein; Belongs to the bacterial secretin family. (801 aa)
Tery_1745PFAM: type II secretion system protein; KEGG: ava:Ava_0374 type II secretion system protein. (377 aa)
Tery_1747KEGG: syn:slr0161 twitching motility protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: ATPase. (370 aa)
Tery_1748PFAM: type II secretion system protein E; KEGG: ana:all2444 general secretion pathway protein E. (723 aa)
Tery_1870KEGG: ana:all3087 hypothetical protein; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; PFAM: helix-hairpin-helix motif phospholipase D/Transphosphatidylase; SMART: Helix-hairpin-helix DNA-binding, class 1. (545 aa)
Tery_2388PHA accumulation regulator DNA-binding-like; PFAM: methylation; KEGG: ava:Ava_0345 general secretion pathway protein H. (180 aa)
Tery_2683Type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. (273 aa)
Tery_2933TIGRFAM: DNA protecting protein DprA; PFAM: SMF protein; KEGG: ana:all1325 DNA processing protein. (380 aa)
Tery_3864PFAM: ComEC/Rec2-related protein; KEGG: ana:all1983 competence protein. (816 aa)
Tery_4117PHA accumulation regulator DNA-binding-like; PFAM: methylation; KEGG: ana:all1769 unknown protein. (236 aa)
Tery_4118TIGRFAM: Prepilin-type cleavage/methylation-like; KEGG: ana:all1770 unknown protein. (338 aa)
Tery_4119TIGRFAM: Prepilin-type cleavage/methylation-like; KEGG: ava:Ava_0265 hypothetical protein. (243 aa)
Tery_4672TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: ana:all3329 twitching motility protein. (429 aa)
Tery_4765Mg chelatase, subunit ChlI; KEGG: ana:alr4088 competence protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase, ChlI subunit ATPase associated with various cellular activities, AAA_5; SMART: ATPase. (509 aa)
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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