STRINGSTRING
Tery_3265 Tery_3265 Tery_3266 Tery_3266 Tery_3487 Tery_3487 Tery_3488 Tery_3488 Tery_3489 Tery_3489
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Tery_3265KEGG: ana:alr1398 hypothetical protein. (845 aa)
Tery_3266TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: surface antigen (D15) filamentous haemagglutinin-like surface antigen variable number Polypeptide-transport-associated, ShlB-type; KEGG: ava:Ava_4131 filamentous haemagglutinin-like. (1349 aa)
Tery_3487TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: surface antigen (D15) filamentous haemagglutinin-like surface antigen variable number Polypeptide-transport-associated, ShlB-type; KEGG: ava:Ava_4426 surface antigen variable number. (1570 aa)
Tery_3488SMART: Tetratricopeptide region; KEGG: ana:all1176 hypothetical protein. (840 aa)
Tery_3489TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: surface antigen (D15) filamentous haemagglutinin-like surface antigen variable number Polypeptide-transport-associated, ShlB-type; KEGG: ana:alr1184 unknown protein. (1391 aa)
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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