STRINGSTRING
fbp fbp ppc ppc Tery_0948 Tery_0948 Tery_1574 Tery_1574 Tery_3396 Tery_3396 Tery_3846 Tery_3846 Tery_3847 Tery_3847 Tery_3849 Tery_3849 Tery_3850 Tery_3850 Tery_3851 Tery_3851 Tery_3852 Tery_3852 Tery_3970 Tery_3970 Tery_4328 Tery_4328 Tery_4329 Tery_4329 Tery_4408 Tery_4408 Tery_4409 Tery_4409 cbbL cbbL
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
fbpPFAM: Inositol phosphatase/fructose-1,6-bisphosphatase; KEGG: ava:Ava_1680 fructose-1,6-bisphosphatase. (354 aa)
ppcPhosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle; Belongs to the PEPCase type 1 family. (1038 aa)
Tery_0948D-fructose 1,6-bisphosphatase / sedoheptulose 1,7-bisphosphatase; Catalyzes the hydrolysis of fructose 1,6-bisphosphate (Fru 1,6-P2) and sedoheptulose 1,7-bisphosphate (Sed 1,7-P2) to fructose 6- phosphate and sedoheptulose 7-phosphate, respectively; Belongs to the FBPase class 2 family. (345 aa)
Tery_1574PFAM: ribulose bisphosphate carboxylase, small chain AAA ATPase, central region; KEGG: ava:Ava_3903 AAA ATPase, central region. (423 aa)
Tery_3396PFAM: microcompartments protein; KEGG: syf:Synpcc7942_0520 hypothetical protein. (212 aa)
Tery_3846PFAM: microcompartments protein; KEGG: ava:Ava_4467 microcompartments protein. (258 aa)
Tery_3847KEGG: ava:Ava_4468 transferase hexapeptide repeat. (304 aa)
Tery_3849Carbonate dehydratase; PFAM: ribulose bisphosphate carboxylase, small chain transferase hexapeptide repeat; KEGG: gvi:gll2093 carbon dioxide concentrating mechanism protein. (672 aa)
Tery_3850PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: ava:Ava_4470 ethanolamine utilization protein EutN/carboxysome structural protein CcmL. (100 aa)
Tery_3851PFAM: microcompartments protein; KEGG: ava:Ava_4471 microcompartments protein. (112 aa)
Tery_3852PFAM: microcompartments protein; KEGG: ava:Ava_4472 microcompartments protein. (103 aa)
Tery_3970KEGG: ava:Ava_1424 hypothetical protein. (372 aa)
Tery_4328PFAM: microcompartments protein; KEGG: ana:alr0317 carbon dioxide concentrating mechanism protein. (101 aa)
Tery_4329PFAM: microcompartments protein; KEGG: ava:Ava_4710 microcompartments protein. (118 aa)
Tery_4408PFAM: ribulose bisphosphate carboxylase, small chain; KEGG: syn:slr0012 ribulose-bisphosphate carboxylase small chain. (111 aa)
Tery_4409PFAM: chaperonin-like RbcX; KEGG: ava:Ava_3906 chaperonin-like RbcX. (128 aa)
cbbLRibulose-1,5-bisphosphate carboxylase/oxygenase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. (476 aa)
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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