Your Input: | |
| | Tery_3279 | PFAM: ribonuclease T2; KEGG: mlo:mll1611 probable ribonuclease; Belongs to the RNase T2 family. (350 aa) |
| | valS | valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily. (911 aa) |
| | rpoZ | DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. (82 aa) |
| | pheS | KEGG: ava:Ava_2115 phenylalanyl-tRNA synthetase alpha subunit; TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase, class IIc aminoacyl tRNA synthetase, class II-like; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily. (331 aa) |
| | serS | seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec). (425 aa) |
| | Tery_3545 | Protein of unknown function DUF558; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. (258 aa) |
| | ileS | Isoleucyl-tRNA synthetase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 1 subfamily. (1152 aa) |
| | Tery_3617 | DALR anticodon binding. (300 aa) |
| | Tery_3730 | PFAM: ribonuclease II; KEGG: syn:sll1290 ribonuclease II. (674 aa) |
| | rimO | MiaB-like tRNA modifying enzyme YliG; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily. (441 aa) |
| | rsmG | Methyltransferase GidB; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family. (255 aa) |
| | Tery_3840 | KEGG: ana:alr4172 hypothetical protein. (492 aa) |
| | glyQ | Glycine--tRNA ligase; PFAM: glycyl-tRNA synthetase, alpha subunit; KEGG: syf:Synpcc7942_2457 glycyl-tRNA synthetase, alpha subunit. (294 aa) |
| | trmJ | RNA methyltransferase, TrmH family, group 1; Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA. (248 aa) |
| | Tery_3916 | RNA polymerase, sigma 28 subunit; PFAM: sigma-70 region 3 sigma-70 region 2 sigma-70 region 4 sigma-70, region 4 type 2; KEGG: ava:Ava_1844 sigma factor SigF. (254 aa) |
| | miaA | tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. (309 aa) |
| | nusA | NusA antitermination factor; Participates in both transcription termination and antitermination. (426 aa) |
| | argS | KEGG: ana:all3717 arginyl-tRNA-synthetase; TIGRFAM: arginyl-tRNA synthetase. (585 aa) |
| | cysS | KEGG: ana:all1092 cysteinyl-tRNA synthetase; TIGRFAM: cysteinyl-tRNA synthetase; PFAM: cysteinyl-tRNA synthetase, class Ia; Belongs to the class-I aminoacyl-tRNA synthetase family. (489 aa) |
| | Tery_4005 | PFAM: RNA-binding region RNP-1 (RNA recognition motif); KEGG: ana:all4377 RNA-binding protein. (158 aa) |
| | Tery_4058 | RNA polymerase, sigma 28 subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (319 aa) |
| | Tery_4066 | KEGG: syn:slr0482 hypothetical protein. (84 aa) |
| | tadA | tRNA-adenosine deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family. (156 aa) |
| | Tery_4284 | SMART: Rhodanese-like; KEGG: pca:Pcar_0278 rhodanese-like domain protein. (339 aa) |
| | Tery_4322 | PFAM: protein of unknown function DUF88; KEGG: ava:Ava_2110 protein of unknown function DUF88. (171 aa) |
| | Tery_4370 | RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 sigma-70 region 4 Sigma-70, region 4 type 2; KEGG: ava:Ava_4933 RNA polymerase sigma-70 factor; Belongs to the sigma-70 factor family. ECF subfamily. (218 aa) |
| | Tery_4379 | Holliday junction resolvase YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. (149 aa) |
| | Tery_4387 | Hypothetical protein. (247 aa) |
| | Tery_4426 | RNA polymerase, sigma 28 subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (384 aa) |
| | glyS | Glycine--tRNA ligase; KEGG: ava:Ava_0794 glycyl-tRNA synthetase beta subunit. (719 aa) |
| | rimM | 16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. (208 aa) |
| | Tery_4630 | PFAM: NAD-dependent epimerase/dehydratase 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: ava:Ava_2101 3-beta hydroxysteroid dehydrogenase/isomerase. (310 aa) |
| | trpS | tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family. (339 aa) |
| | Tery_4701 | PFAM: RNA-binding region RNP-1 (RNA recognition motif); KEGG: ava:Ava_4642 RNA-binding region RNP-1. (97 aa) |
| | Tery_4702 | PFAM: RNA-binding region RNP-1 (RNA recognition motif); KEGG: ava:Ava_4642 RNA-binding region RNP-1. (102 aa) |
| | rnpA | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. (159 aa) |
| | Tery_4709 | KEGG: ana:alr3414 hypothetical protein. (129 aa) |
| | Tery_4732 | Ribonuclease H; KEGG: ava:Ava_1511 ribonuclease H. (86 aa) |
| | mnmE | tRNA modification GTPase trmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family. (467 aa) |
| | Tery_4802 | 23S rRNA (uracil-5-)-methyltransferase RumA; TIGRFAM: RNA methyltransferase, TrmA family; PFAM: deoxyribonuclease/rho motif-related TRAM (Uracil-5)-methyltransferase; KEGG: ana:alr3654 putative RNA methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (485 aa) |
| | alaS | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. (874 aa) |
| | rsmH | S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA. (283 aa) |
| | queG | Putative iron-sulfur cluster binding protein; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr); Belongs to the QueG family. (308 aa) |
| | Tery_4894 | KEGG: ava:Ava_0784 hypothetical protein. (140 aa) |
| | cmoB | Methyltransferase, putative; Catalyzes carboxymethyl transfer from carboxy-S-adenosyl-L- methionine (Cx-SAM) to 5-hydroxyuridine (ho5U) to form 5- carboxymethoxyuridine (cmo5U) at position 34 in tRNAs. Belongs to the class I-like SAM-binding methyltransferase superfamily. CmoB family. (326 aa) |
| | Tery_4943 | PFAM: tRNA--hydroxylase; KEGG: ava:Ava_0979 tRNA--hydroxylase. (199 aa) |
| | ybeY | Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. (183 aa) |
| | sigA | RNA polymerase, sigma 28 subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. (386 aa) |
| | Tery_0899 | KEGG: ava:Ava_3324 PilT protein-like. (62 aa) |
| | trmB | tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. (220 aa) |
| | Tery_0784 | RNA polymerase, sigma 28 subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (336 aa) |
| | hisS-2 | KEGG: ana:all5012 histidyl-tRNA synthetase; TIGRFAM: histidyl-tRNA synthetase; PFAM: tRNA synthetase, class II (G, H, P and S) Anticodon-binding. (467 aa) |
| | Tery_0744 | Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. (443 aa) |
| | nusB | NusB antitermination factor; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. (207 aa) |
| | dnaG | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (675 aa) |
| | mnmA | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34. (359 aa) |
| | Tery_0720 | KEGG: gvi:gll2048 hypothetical protein. (68 aa) |
| | rsmA | Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. (281 aa) |
| | rnz | RNAse Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family. (321 aa) |
| | rnj | Conserved hypothetical protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay. (596 aa) |
| | hisS | ATP phosphoribosyltransferase regulatory subunit; KEGG: mth:MTH244 histidyl-tRNA synthetase; TIGRFAM: histidyl-tRNA synthetase; PFAM: tRNA synthetase, class II (G, H, P and S) Anticodon-binding. (517 aa) |
| | Tery_0526 | PFAM: protein of unknown function DUF88; KEGG: cyb:CYB_1055 hypothetical protein. (295 aa) |
| | Tery_0499 | TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; KEGG: ana:all4384 hypothetical protein. (475 aa) |
| | Tery_0483 | TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1; KEGG: ana:alr4331 ribonuclease E. (682 aa) |
| | rnhB | RNase HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family. (211 aa) |
| | tyrS | tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 2 subfamily. (405 aa) |
| | dtd | D-tyrosyl-tRNA(Tyr) deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family. (153 aa) |
| | Tery_0385 | RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 sigma-70 region 4 Sigma-70, region 4 type 2; KEGG: mta:Moth_2362 sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily. (362 aa) |
| | miaB | tRNA-i(6)A37 thiotransferase enzyme MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine. (451 aa) |
| | cmoA | Putative methyltransferase; Catalyzes the conversion of S-adenosyl-L-methionine (SAM) to carboxy-S-adenosyl-L-methionine (Cx-SAM); Belongs to the class I-like SAM-binding methyltransferase superfamily. Cx-SAM synthase family. (253 aa) |
| | Tery_0325 | Methyltransferase small; Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC). (239 aa) |
| | nusG | Transcription antitermination protein nusG; Participates in transcription elongation, termination and antitermination. (224 aa) |
| | Tery_0249 | PFAM: putative RNA methylase THUMP; KEGG: gvi:glr4041 hypothetical protein; Belongs to the methyltransferase superfamily. (374 aa) |
| | Tery_0238 | tRNA/rRNA methyltransferase (SpoU); Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily. (153 aa) |
| | gltX | glutamate--tRNA(Gln) ligase / glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily. (881 aa) |
| | Tery_0018 | PFAM: Rho termination factor-like; KEGG: ava:Ava_4273 Rho termination factor-like. (731 aa) |
| | Tery_0012 | Helicase-like; KEGG: ava:Ava_C0236 helicase-like. (1248 aa) |
| | Tery_1062 | PFAM: peptidase M22, glycoprotease; KEGG: ava:Ava_3835 peptidase M22, glycoprotease. (211 aa) |
| | Tery_1064 | PFAM: Polynucleotide adenylyltransferase region; KEGG: ana:all3136 tRNA nucleotidyltransferase (CCA-adding enzyme). (423 aa) |
| | Tery_1066 | KEGG: syn:slr0554 hypothetical protein. (1015 aa) |
| | rnc | RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. (250 aa) |
| | Tery_1134 | KEGG: ava:Ava_3446 hypothetical protein. (126 aa) |
| | Tery_1184 | KEGG: ddi:DDB0189873 hypothetical protein. (427 aa) |
| | Tery_1185 | Hypothetical protein; KEGG: ehi:5.t00037 myosin heavy chain Pfam: Myosin_head DUF1409 DUF883 Filament DREPP Myosin_tail_1 PCRF PROSITE: GLU_RICH LYS_RICH. (597 aa) |
| | Tery_1214 | RNA polymerase, sigma 28 subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (496 aa) |
| | Tery_1293 | TIGRFAM: Pseudouridine synthase, Rsu; PFAM: RNA-binding S4 pseudouridine synthase; KEGG: ana:all3873 putative pseudouridylate synthase; Belongs to the pseudouridine synthase RsuA family. (254 aa) |
| | proS | prolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves dea [...] (601 aa) |
| | Tery_1325 | Putative TIM-barrel protein, nifR3 family; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. (334 aa) |
| | Tery_1361 | PFAM: Methyltransferase type 11 Methyltransferase type 12; KEGG: noc:Noc_1379 hypothetical protein. (854 aa) |
| | Tery_1421 | Polynucleotide adenylyltransferase region; PFAM: CBS domain containing protein phosphoesterase, RecJ-like Polynucleotide adenylyltransferase region; KEGG: ana:all3989 polyA polymerase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. (909 aa) |
| | thrS | Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase; TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase, class II (G, H, P and S) Anticodon-binding Threonyl/alanyl tRNA synthetase, SAD; KEGG: ana:alr0335 threonyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family. (608 aa) |
| | Tery_1462 | KEGG: cya:CYA_1550 replicative DNA helicase; TIGRFAM: Protein splicing (intein) site; PFAM: DnaB-like helicase-like; SMART: Hedgehog/intein hint domain-like Hedgehog/intein hint-like. (2605 aa) |
| | Tery_1511 | RNAse R; KEGG: ava:Ava_0549 3'-5' exoribonuclease, VacB and RNase II; TIGRFAM: VacB and RNase II family 3'-5' exoribonucleases; PFAM: ribonuclease II RNA binding S1 Ribonuclease B, OB region-like; SMART: Cold shock protein; Belongs to the RNR ribonuclease family. (766 aa) |
| | pnp | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. (717 aa) |
| | rnhA | RNase HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (157 aa) |
| | rsmI | Protein of unknown function UPF0011; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. (279 aa) |
| | tsaD | O-sialoglycoprotein endopeptidase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family. (325 aa) |
| | leuS | TIGRFAM: leucyl-tRNA synthetase; KEGG: ana:alr3283 leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. (929 aa) |
| | Tery_1752 | PFAM: SirA-like; KEGG: ana:asr2448 hypothetical protein; Belongs to the sulfur carrier protein TusA family. (89 aa) |
| | fmt | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. (336 aa) |
| | Tery_1805 | PFAM: protein of unknown function DUF88; KEGG: ava:Ava_2722 protein of unknown function DUF88. (204 aa) |
| | metG | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. (530 aa) |
| | Tery_1849 | Ribosomal large subunit pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. (316 aa) |
| | Tery_1863 | PFAM: RNA-binding region RNP-1 (RNA recognition motif); KEGG: ana:alr4683 RNA-binding protein. (89 aa) |
| | Tery_1904 | PFAM: GTP-binding protein, HSR1-related; KEGG: ana:all3787 hypothetical protein. (545 aa) |
| | Tery_1956 | RNA polymerase, sigma 28 subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (410 aa) |
| | trmD | tRNA (Guanine37-N(1)-) methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family. (227 aa) |
| | Tery_1967 | KEGG: ana:all3054 putative phosphate transport system substrate-binding protein. (862 aa) |
| | pheT | KEGG: ava:Ava_2221 phenylalanyl-tRNA synthetase beta subunit; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit. (817 aa) |
| | rph | RNAse PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. (238 aa) |
| | Tery_2142 | TIGRFAM: putative methyltransferase; PFAM: conserved hypothetical protein 95; KEGG: ava:Ava_4018 hypothetical protein. (182 aa) |
| | rnc-2 | RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. (233 aa) |
| | Tery_2157 | PFAM: protein of unknown function UPF0079; KEGG: ava:Ava_0118 protein of unknown function UPF0079. (165 aa) |
| | asnS | TIGRFAM: asparaginyl-tRNA synthetase; PFAM: tRNA synthetase, class II (D, K and N) nucleic acid binding, OB-fold, tRNA/helicase-type; KEGG: ava:Ava_3630 asparaginyl-tRNA synthetase. (463 aa) |
| | trmH | tRNA/rRNA methyltransferase (SpoU); Catalyzes the 2'-O methylation of guanosine at position 18 in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. (234 aa) |
| | mrnC | Ribonuclease III; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family. (130 aa) |
| | Tery_2313 | TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU) RNA 2-O ribose methyltransferase, substrate binding; KEGG: ava:Ava_4413 RNA methyltransferase TrmH, group 3; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. (288 aa) |
| | truB | tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. (301 aa) |
| | aspS | aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. (595 aa) |
| | lysS | TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase, class II (D, K and N) nucleic acid binding, OB-fold, tRNA/helicase-type; KEGG: syn:slr1550 lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family. (522 aa) |
| | Tery_2372 | KEGG: ana:all3530 hypothetical protein. (444 aa) |
| | Tery_2380 | PFAM: GTP-binding protein, HSR1-related; KEGG: ava:Ava_2089 small GTP-binding protein domain. (635 aa) |
| | Tery_2403 | TIGRFAM: Pseudouridine synthase, Rsu; PFAM: pseudouridine synthase; KEGG: ava:Ava_0356 pseudouridine synthase, Rsu; Belongs to the pseudouridine synthase RsuA family. (201 aa) |
| | tgt | Queuine tRNA-ribosyltransferase; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, - Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form t [...] (367 aa) |
| | Tery_2553 | RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 sigma-70 region 4 Sigma-70, region 4 type 2; KEGG: mta:Moth_2362 sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily. (439 aa) |
| | Tery_2839 | PFAM: ribonuclease III; KEGG: bba:Bd1941 ribonuclease III. (209 aa) |
| | mnmG | Glucose inhibited division protein A; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family. (637 aa) |
| | rbfA | Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. (137 aa) |
| | priA | Replication restart DNA helicase PriA; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (914 aa) |
| | rlmN | Radical SAM enzyme, Cfr family; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family. (345 aa) |
| | rpoC2 | DNA-directed RNA polymerase, beta'' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the RNA polymerase beta' chain family. RpoC2 subfamily. (1415 aa) |
| | rpoC1 | DNA-directed RNA polymerase, gamma subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (672 aa) |
| | rpoB | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1102 aa) |
| | dtd3 | Sec-independent protein translocase TatD; Catalyzes the hydrolysis of D-tyrosyl-tRNA(Tyr). (273 aa) |
| | truA | tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. (272 aa) |
| | rpoA | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (321 aa) |
| | Tery_3039 | KEGG: ana:all1763 hypothetical protein. (259 aa) |
| | Tery_3121 | PFAM: O-methyltransferase, family 2 Methyltransferase type 12; KEGG: dre:568256 similar to Hydroxyindole O-methyltransferase (HIOMT) (Acetylserotonin O-methyltransferase) (ASMT). (368 aa) |
| | Tery_3173 | PFAM: tRNA/rRNA methyltransferase (SpoU) RNA 2-O ribose methyltransferase, substrate binding; KEGG: ana:alr0175 rRNA methylase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. (261 aa) |
| | Tery_3208 | Conserved hypothetical protein; KEGG: ana:alr3583 unknown protein. (230 aa) |
| | tilS | tRNA(Ile)-lysidine synthetase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family. (344 aa) |
