STRINGSTRING
Tery_0104 Tery_0104 Tery_0611 Tery_0611 ccsB ccsB Tery_0628 Tery_0628 ccsA ccsA Tery_0750 Tery_0750 thf1 thf1 Tery_1189 Tery_1189 psb27 psb27 rplT rplT petG petG psbV psbV Tery_2896 Tery_2896 Tery_3457 Tery_3457 Tery_3503 Tery_3503 Tery_3687 Tery_3687 ftsZ ftsZ Tery_3914 Tery_3914 Tery_3917 Tery_3917 Tery_3970 Tery_3970 nifEN nifEN Tery_4409 Tery_4409 Tery_4442 Tery_4442 Tery_4494 Tery_4494 Tery_4728 Tery_4728 Tery_5067 Tery_5067
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Tery_0104PFAM: Vitamin K epoxide reductase; KEGG: tel:tlr0588 hypothetical protein. (301 aa)
Tery_0611KEGG: ana:all5169 hypothetical protein. (159 aa)
ccsBResB-like; Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment. (472 aa)
Tery_0628PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: ava:Ava_3823 cytochrome c biogenesis protein, transmembrane region. (243 aa)
ccsACytochrome c assembly protein; Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment. (351 aa)
Tery_0750Hypothetical protein; KEGG: hma:pNG7128 urease accessory protein UreE. (175 aa)
thf1Conserved hypothetical protein; May be involved in photosynthetic membrane biogenesis. (239 aa)
Tery_1189KEGG: syn:sll0445 hypothetical protein. (490 aa)
psb27Photosystem II 11 kD protein; Plays a role in the repair and/or biogenesis of the calcium- manganese-oxide cluster on the lumenal face of the thylakoid membrane. Its presence in a photosystem II (PSII) preparation prevents binding of some small extrinsic subunits and thus assembly of calcium-manganese- oxide cluster. (131 aa)
rplTLSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (118 aa)
petGCytochrome b6/f complex, subunit 5; Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. PetG is required for either the stability or assembly of the cytochrome b6-f complex. (37 aa)
psbVCytochrome c, class I; Low-potential cytochrome c that plays a role in the oxygen- evolving complex of photosystem II. (161 aa)
Tery_2896KEGG: ana:asl2557 hypothetical protein. (93 aa)
Tery_3457PFAM: NmrA-like; KEGG: ana:all5026 hypothetical protein. (500 aa)
Tery_3503Glycosyl hydrolase, BNR repeat; Unknown. The ortholog in A.thaliana is involved in photosystem II (PSII) assembly, but knockout of the corresponding gene in Synechoccus PCC 7002 has no effect on PSII activity. (337 aa)
Tery_3687PFAM: protein of unknown function DUF1092; KEGG: ava:Ava_0136 protein of unknown function DUF1092. (283 aa)
ftsZCell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity. (423 aa)
Tery_3914KEGG: ava:Ava_1721 hypothetical protein. (177 aa)
Tery_3917PFAM: photosystem II manganese-stabilizing protein PsbO; KEGG: ana:all3854 manganese-stabilzing protein precursor. (278 aa)
Tery_3970KEGG: ava:Ava_1424 hypothetical protein. (372 aa)
nifENKEGG: ava:Ava_4251 nitrogenase MoFe cofactor biosynthesis protein NifE; TIGRFAM: nitrogenase MoFe cofactor biosynthesis protein NifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifN; PFAM: oxidoreductase/nitrogenase, component 1; Belongs to the NifD/NifK/NifE/NifN family. (936 aa)
Tery_4409PFAM: chaperonin-like RbcX; KEGG: ava:Ava_3906 chaperonin-like RbcX. (128 aa)
Tery_4442TIGRFAM: small GTP-binding protein GTP-binding protein TypA; PFAM: elongation factor G-like protein synthesis factor, GTP-binding elongation factor Tu, domain 2; KEGG: tel:tlr2283 GTP-binding protein TypA homolog tlr2283. (596 aa)
Tery_4494KEGG: ana:alr4810 hypothetical protein. (107 aa)
Tery_4728PFAM: protein of unknown function DUF1092; KEGG: ava:Ava_2159 protein of unknown function DUF1092. (286 aa)
Tery_5067PFAM: heat shock protein DnaJ-like; KEGG: ana:all2707 hypothetical protein. (789 aa)
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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