STRINGSTRING
Tery_4618 Tery_4618 Tery_3424 Tery_3424 Tery_2665 Tery_2665 petJ petJ Tery_1179 Tery_1179 Tery_1138 Tery_1138 Tery_0639 Tery_0639 murQ murQ
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Tery_4618PFAM: cytochrome c, class I; KEGG: ana:all0161 cytochrome c6. (111 aa)
Tery_3424KEGG: ana:alr4514 hypothetical protein. (106 aa)
Tery_2665KEGG: ana:alr2783 unknown protein. (379 aa)
petJCytochrome c, class I; Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis. (131 aa)
Tery_1179PFAM: peptidase M16-like Peptidase M16C associated; KEGG: pca:Pcar_0673 metalloprotease, putative. (987 aa)
Tery_1138C-terminal processing peptidase-2. Serine peptidase. MEROPS family S41A; KEGG: ava:Ava_3440 peptidase S41A; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF peptidase S41; Belongs to the peptidase S41A family. (412 aa)
Tery_0639KEGG: gvi:glr1965 WD-repeat protein. (315 aa)
murQGlucokinase regulatory-like protein; Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6-phosphate and D- lactate. (307 aa)
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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