STRINGSTRING
Tery_1609 Tery_1609 Tery_1630 Tery_1630 Tery_2549 Tery_2549 rlpA rlpA Tery_3195 Tery_3195 Tery_3266 Tery_3266 Tery_3487 Tery_3487 Tery_3489 Tery_3489 Tery_4118 Tery_4118 Tery_0140 Tery_0140 Tery_0162 Tery_0162 Tery_0311 Tery_0311 Tery_0363 Tery_0363 Tery_0378 Tery_0378 Tery_4653 Tery_4653 Tery_0864 Tery_0864 Tery_1366 Tery_1366 Tery_1533 Tery_1533
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Tery_1609PFAM: type II and III secretion system protein NolW-like Secretin/TonB, short N-terminal; KEGG: ava:Ava_3689 type II and III secretion system protein; Belongs to the bacterial secretin family. (801 aa)
Tery_1630KEGG: ava:Ava_4182 surface antigen variable number. (143 aa)
Tery_2549Hypothetical protein; KEGG: ava:Ava_3164 Cna B-type. (947 aa)
rlpARare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides. (342 aa)
Tery_3195KEGG: ava:Ava_3002 hypothetical protein. (871 aa)
Tery_3266TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: surface antigen (D15) filamentous haemagglutinin-like surface antigen variable number Polypeptide-transport-associated, ShlB-type; KEGG: ava:Ava_4131 filamentous haemagglutinin-like. (1349 aa)
Tery_3487TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: surface antigen (D15) filamentous haemagglutinin-like surface antigen variable number Polypeptide-transport-associated, ShlB-type; KEGG: ava:Ava_4426 surface antigen variable number. (1570 aa)
Tery_3489TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: surface antigen (D15) filamentous haemagglutinin-like surface antigen variable number Polypeptide-transport-associated, ShlB-type; KEGG: ana:alr1184 unknown protein. (1391 aa)
Tery_4118TIGRFAM: Prepilin-type cleavage/methylation-like; KEGG: ana:all1770 unknown protein. (338 aa)
Tery_0140L-threonine synthase; Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine. (371 aa)
Tery_0162Redoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Prx5 subfamily. (189 aa)
Tery_0311PFAM: OmpA/MotB; KEGG: cyb:CYB_2329 OmpA family protein. (246 aa)
Tery_0363TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: filamentous haemagglutinin-like; KEGG: syn:slr1753 hypothetical protein. (1772 aa)
Tery_0378PFAM: surface antigen (D15) Polypeptide-transport-associated, ShlB-type; KEGG: ava:Ava_4426 surface antigen variable number. (595 aa)
Tery_4653PFAM: surface antigen (D15) surface antigen variable numbeR Polypeptide-transport-associated, ShlB-type; KEGG: ava:Ava_0094 surface antigen variable number. (999 aa)
Tery_0864Hypothetical protein. (123 aa)
Tery_1366PFAM: amine oxidase; KEGG: nfa:nfa26430 putative amino acid oxidase. (523 aa)
Tery_1533PFAM: surface antigen (D15) Polypeptide-transport-associated, ShlB-type; KEGG: tel:tlr0438 putative hemolysin activation/secretion protein. (692 aa)
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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