STRINGSTRING
Tery_0400 Tery_0400 Tery_0647 Tery_0647 Tery_0203 Tery_0203 Tery_0665 Tery_0665 Tery_0943 Tery_0943 Tery_1470 Tery_1470 Tery_2417 Tery_2417 Tery_3993 Tery_3993 Tery_4221 Tery_4221 Tery_4447 Tery_4447 Tery_4980 Tery_4980
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Tery_0400PFAM: adenylyl cyclase class-3/4/guanylyl cyclase GAF Tetratricopeptide TPR_3; SMART: PAS; KEGG: ava:Ava_0091 adenylate/guanylate cyclase. (864 aa)
Tery_0647PFAM: adenylyl cyclase class-3/4/guanylyl cyclase GAF; SMART: PAS; KEGG: ana:all1904 adenylate cyclase. (911 aa)
Tery_0203PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like histidine kinase A-like; SMART: PAS; KEGG: ana:all0707 two-component sensor histidine kinase. (439 aa)
Tery_0665Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); KEGG: ana:alr3170 hypothetical protein; TIGRFAM: PAS sensor protein diguanylate cyclase; PFAM: conserved hypothetical protein EAL PAS fold-3 PAS fold-4 PAS fold; SMART: PAS PAC motif. (866 aa)
Tery_0943KEGG: ava:Ava_1029 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiveR ATP-binding region, ATPase-like histidine kinase, HAMP region histidine kinase A-like Hpt PAS fold-3 PAS fold-4 PAS fold; SMART: PAS PAC motif. (1384 aa)
Tery_1470KEGG: ava:Ava_3226 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase-like histidine kinase, HAMP region histidine kinase A-like PAS fold; SMART: PAS. (716 aa)
Tery_2417KEGG: ana:all0661 adenylate cyclase; TIGRFAM: PAS sensor protein; PFAM: adenylyl cyclase class-3/4/guanylyl cyclase PAS fold-3 PAS fold-4 PAS fold; SMART: PAS PAC motif; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family. (1207 aa)
Tery_3993Adenylate/guanylate cyclase; KEGG: syn:sll0537 ammonium/methylammonium permease; TIGRFAM: PAS sensor protein ammonium transporter; PFAM: adenylyl cyclase class-3/4/guanylyl cyclase Rh-like protein/ammonium transporteR PAS fold-3 PAS fold-4 PAS fold; SMART: PAS PAC motif. (1209 aa)
Tery_4221PFAM: ATP-binding region, ATPase-like histidine kinase A-like; SMART: PAS; KEGG: mac:MA1270 sensory transduction histidine kinase. (380 aa)
Tery_4447Multi-sensor hybrid histidine kinase; KEGG: ana:all2875 two-component hybrid sensor and regulator; TIGRFAM: PAS sensor protein; PFAM: CBS domain containing protein response regulator receiveR GAF ATP-binding region, ATPase-like histidine kinase A-like PAS fold-3 PAS fold; SMART: PAS PAC motif. (1878 aa)
Tery_4980Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); KEGG: ana:all0219 hypothetical protein; TIGRFAM: PAS sensor protein diguanylate cyclase; PFAM: conserved hypothetical protein EAL response regulator receiveR PAS fold-3 PAS fold; SMART: PAS. (771 aa)
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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