STRINGSTRING
Tery_0210 Tery_0210 Tery_0768 Tery_0768 Tery_1175 Tery_1175 Tery_1552 Tery_1552 rsmI rsmI Tery_3325 Tery_3325 Tery_4366 Tery_4366
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Tery_0210KEGG: syn:sll0099 precorrin-6y C5, 15-methyltransferase (decarboxylating); TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase. (437 aa)
Tery_0768TIGRFAM: precorrin-2 C20-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: syf:Synpcc7942_1853 precorrin-2 C20-methyltransferase; Belongs to the precorrin methyltransferase family. (232 aa)
Tery_1175TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: ava:Ava_2922 uroporphyrin-III C-methyltransferase; Belongs to the precorrin methyltransferase family. (252 aa)
Tery_1552KEGG: ana:all4698 precorrin-3 methylase; TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Belongs to the precorrin methyltransferase family. (283 aa)
rsmIProtein of unknown function UPF0011; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. (279 aa)
Tery_3325uroporphyrinogen-III synthase / uroporphyrinogen-III C-methyltransferase; TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase Uroporphyrinogen III synthase HEM4; KEGG: ana:alr3450 uroporphyrinogen III methylase; Belongs to the precorrin methyltransferase family. (512 aa)
Tery_4366TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase cobalamin (vitamin B12) biosynthesis CbiG protein; KEGG: syn:slr0969 Precorrin-3B C17-methyltransferase (Precorrin-3 methyltransferase) (Precorrin-3 methylase, necessary for ring contraction in the conversion from precorrin-3B to precorrin-4. (663 aa)
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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