STRINGSTRING
Tery_4731 Tery_4731 Tery_2499 Tery_2499 Tery_0665 Tery_0665 Tery_4231 Tery_4231 Tery_4980 Tery_4980
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Tery_4731PFAM: RNA-directed DNA polymerase (Reverse transcriptase) Group II intron, maturase-specific; KEGG: tel:tlr0522 reverse transcriptase. (437 aa)
Tery_2499TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL; KEGG: ana:all4897 hypothetical protein. (615 aa)
Tery_0665Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); KEGG: ana:alr3170 hypothetical protein; TIGRFAM: PAS sensor protein diguanylate cyclase; PFAM: conserved hypothetical protein EAL PAS fold-3 PAS fold-4 PAS fold; SMART: PAS PAC motif. (866 aa)
Tery_4231TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein response regulator receiver; KEGG: lic:LIC11444 response regulator. (357 aa)
Tery_4980Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); KEGG: ana:all0219 hypothetical protein; TIGRFAM: PAS sensor protein diguanylate cyclase; PFAM: conserved hypothetical protein EAL response regulator receiveR PAS fold-3 PAS fold; SMART: PAS. (771 aa)
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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