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BFO_0175 BFO_0175 BFO_0176 BFO_0176 BFO_0252 BFO_0252 etfA_1 etfA_1 etfB_1 etfB_1 BFO_0515 BFO_0515 BFO_0654 BFO_0654 leuA leuA leuC leuC leuD leuD BFO_0823 BFO_0823 leuB leuB pckA pckA oadB oadB BFO_0963 BFO_0963 BFO_0964 BFO_0964 BFO_0965 BFO_0965 mce mce BFO_0988 BFO_0988 BFO_0992 BFO_0992 BFO_1025 BFO_1025 gdh gdh fumB fumB ackA ackA pta pta abfD abfD BFO_1485 BFO_1485 cat cat BFO_1487 BFO_1487 BFO_1488 BFO_1488 bcd bcd etfB_2 etfB_2 etfA_2 etfA_2 sdhC sdhC sdhA sdhA BFO_1638 BFO_1638 BFO_1760 BFO_1760 BFO_1761 BFO_1761 BFO_2066 BFO_2066 BFO_2712 BFO_2712 mutA mutA BFO_2747 BFO_2747 BFO_2832 BFO_2832 BFO_2833 BFO_2833 BFO_2835 BFO_2835 BFO_2836 BFO_2836 ppdK ppdK nifJ nifJ BFO_3300 BFO_3300
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
BFO_0175AMP-binding enzyme; Identified by match to protein family HMM PF00501. (557 aa)
BFO_0176Cupin domain protein; Identified by match to protein family HMM PF01381; match to protein family HMM PF07883. (184 aa)
BFO_0252acyl-CoA dehydrogenase, C-terminal domain protein; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028. (568 aa)
etfA_1Electron transfer flavoprotein subunit alpha; Identified by match to protein family HMM PF00766; match to protein family HMM PF01012. (339 aa)
etfB_1Electron transfer flavoprotein subunit beta; Identified by match to protein family HMM PF01012. (293 aa)
BFO_0515Lactate/malate dehydrogenase, NAD binding domain protein; Identified by match to protein family HMM PF00056; match to protein family HMM PF02866; Belongs to the LDH/MDH superfamily. (332 aa)
BFO_0654biotin--[acetyl-CoA-carboxylase] ligase; Identified by match to protein family HMM PF03099; match to protein family HMM TIGR00121. (247 aa)
leuA2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 1 subfamily. (495 aa)
leuC3-isopropylmalate dehydratase, large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. (478 aa)
leuD3-isopropylmalate dehydratase, small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily. (197 aa)
BFO_0823Identified by match to protein family HMM PF00682; match to protein family HMM PF08502; Belongs to the alpha-IPM synthase/homocitrate synthase family. (526 aa)
leuB3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate. (357 aa)
pckAPhosphoenolpyruvate carboxykinase (ATP); Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA. (530 aa)
oadBOxaloacetate decarboxylase beta chain; Identified by match to protein family HMM PF03977; match to protein family HMM TIGR01109. (387 aa)
BFO_0963Putative glutaconyl-CoA decarboxylase subunit gamma; Identified by match to protein family HMM PF00364. (143 aa)
BFO_0964Hypothetical protein. (294 aa)
BFO_0965Carboxyl transferase domain protein; Identified by match to protein family HMM PF01039. (517 aa)
mcemethylmalonyl-CoA epimerase; Identified by match to protein family HMM PF00903; match to protein family HMM TIGR03081. (133 aa)
BFO_0988CoA binding domain protein; Identified by match to protein family HMM PF02629. (686 aa)
BFO_0992LAO/AO transport system ATPase; Identified by match to protein family HMM PF03308; match to protein family HMM TIGR00750. (362 aa)
BFO_1025Putative lipoprotein. (528 aa)
gdhGlutamate dehydrogenase, NAD-specific; Identified by match to protein family HMM PF00208; match to protein family HMM PF02812; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (444 aa)
fumBFumarate hydratase class I, anaerobic; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family. (546 aa)
ackAAcetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. (403 aa)
ptaPhosphate acetyltransferase; Identified by match to protein family HMM PF01515; match to protein family HMM TIGR00651. (339 aa)
abfDGamma-aminobutyrate metabolism dehydratase/isomerase; Identified by match to protein family HMM PF03241. (486 aa)
BFO_1485Identified by match to protein family HMM PF01106. (105 aa)
cat4-hydroxybutyrate coenzyme A transferase; Identified by match to protein family HMM PF02550. (430 aa)
BFO_1487Alcohol dehydrogenase, iron-dependent; Identified by match to protein family HMM PF00465. (371 aa)
BFO_1488Identified by match to protein family HMM PF00171. (452 aa)
bcdbutyryl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028. (382 aa)
etfB_2Electron transfer flavoprotein subunit beta; Identified by match to protein family HMM PF01012. (260 aa)
etfA_2Electron transfer flavoprotein subunit alpha; Identified by match to protein family HMM PF00766; match to protein family HMM PF01012. (335 aa)
sdhCSuccinate dehydrogenase cytochrome B subunit, b558 family; Identified by match to protein family HMM TIGR02046. (229 aa)
sdhASuccinate dehydrogenase flavoprotein subunit; Identified by match to protein family HMM PF00890; match to protein family HMM PF02910; match to protein family HMM TIGR01811. (646 aa)
BFO_1638Succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Identified by match to protein family HMM PF00037. (251 aa)
BFO_17602-oxoacid:acceptor oxidoreductase, alpha subunit; Identified by match to protein family HMM PF01855; match to protein family HMM TIGR03710. (619 aa)
BFO_1761Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein; Identified by match to protein family HMM PF02775. (337 aa)
BFO_20664Fe-4S binding domain protein; Identified by match to protein family HMM PF00037. (521 aa)
BFO_2712Putative pyruvate carboxylase subunit B; Identified by match to protein family HMM PF00364; match to protein family HMM PF00682; match to protein family HMM PF02436. (634 aa)
mutAmethylmalonyl-CoA mutase, small subunit; Identified by match to protein family HMM PF01642; match to protein family HMM TIGR00642. (635 aa)
BFO_2747methylmalonyl-CoA mutase; Identified by match to protein family HMM PF01642; match to protein family HMM PF02310; match to protein family HMM TIGR00640; match to protein family HMM TIGR00641. (715 aa)
BFO_28322-oxoacid:ferredoxin/flavodoxin oxidoreductase, gamma subunit; Identified by match to protein family HMM PF01558. (180 aa)
BFO_2833Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein; Identified by match to protein family HMM PF02775. (253 aa)
BFO_28353-methyl-2-oxobutanoate dehydrogenase (ferredoxin); Identified by match to protein family HMM PF01855; match to protein family HMM PF02780. (358 aa)
BFO_2836Identified by match to protein family HMM PF00037. (76 aa)
ppdKPyruvate, phosphate dikinase; Identified by match to protein family HMM PF00391; match to protein family HMM PF01326; match to protein family HMM PF02896; match to protein family HMM TIGR01828; Belongs to the PEP-utilizing enzyme family. (906 aa)
nifJPyruvate synthase; Identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02175; match to protein family HMM TIGR02176. (1180 aa)
BFO_3300Hydrolase, carbon-nitrogen family; Identified by match to protein family HMM PF00795. (262 aa)
Your Current Organism:
Tannerella forsythia
NCBI taxonomy Id: 203275
Other names: T. forsythia 92A2, Tannerella forsythia 92A2
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