(35 nodes) ClpP/crotonase-like domain superfamily network (Pimelobacter simplex)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AIY19081.2	Enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (261 aa)
	paaG_5	enoyl-CoA hydratase. (291 aa)
	AIY20186.2	Enoyl-CoA hydratase. (208 aa)
	AIY20198.2	Methylcrotonyl-CoA carboxylase carboxyl transferase subunit. (516 aa)
	AIY20228.2	3-hydroxyisobutyryl-CoA hydrolase. (338 aa)
	AIY17619.1	enoyl-CoA hydratase echA19. (270 aa)
	paaG_2	Enoyl-CoA hydratase. (264 aa)
	AIY15626.1	Enoyl-CoA hydratase. (260 aa)
	fadB	Short chain enoyl-CoA hydratase [isoleucine degradation]/3-hydroxyacyl-CoA dehydrogenase. (728 aa)
	AIY15691.1	Methylcrotonyl-CoA carboxylase carboxyl transferase subunit. (538 aa)
	AIY15725.2	enoyl-CoA hydratase echA7. (253 aa)
	AIY15867.2	enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (261 aa)
	paaG_1	Enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (272 aa)
	menB	Naphthoate synthase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA); Belongs to the enoyl-CoA hydratase/isomerase family. MenB subfamily. (314 aa)
	AIY15996.1	Enoyl-CoA hydratase. (258 aa)
	paaG_3	Enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (255 aa)
	AIY16637.1	Enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (256 aa)
	AIY16798.1	enoyl-CoA hydratase. (257 aa)
	clpP_1	ATP-dependent Clp protease proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. (198 aa)
	clpP3	ATP-dependent Clp protease proteolytic subunit; Belongs to the peptidase S14 family. (209 aa)
	AIY19823.2	Enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (261 aa)
	accD_1	Acetyl-coenzyme A carboxyl transferase alpha chain. (477 aa)
	AIY17646.1	enoyl-CoA hydratase echA20. (253 aa)
	paaG_6	Enoyl-CoA hydratase. (220 aa)
	AJR18502.1	Propionyl-CoA carboxylase beta chain. (503 aa)
	AIY18173.1	Enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (261 aa)
	AIY18301.2	Propionyl-CoA carboxylase beta chain. (433 aa)
	AIY18458.1	Enoyl-CoA hydratase. (288 aa)
	AIY18471.2	Acetyl-coenzyme A carboxyl transferase alpha chain. (545 aa)
	clpP_2	ATP-dependent Clp protease proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. (201 aa)
	clpP	ATP-dependent Clp protease proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. (201 aa)
	AIY18815.1	enoyl-CoA hydratase echA1; Belongs to the enoyl-CoA hydratase/isomerase family. (269 aa)
	AJR18692.1	Enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (269 aa)
	AIY18845.1	Enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (256 aa)
	accD_2	Acetyl-coenzyme A carboxyl transferase alpha chain. (475 aa)

Your Current Organism:

Pimelobacter simplex

NCBI taxonomy Id: 2045
Other names: ATCC 6946, Arthrobacter simplex, CCUG 23611, CIP 82.106, Corynebacterium simplex, DSM 20130, HAMBI 90, IFO 12069, KCTC 9106, LMG 16261, LMG:16261, NBRC 12069, NCIB 8929, NCIB:8929, Nocardioides simplex, P. simplex

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIY15626.1	AIY20186.2	KR76_00440	KR76_25620	Enoyl-CoA hydratase.	Enoyl-CoA hydratase.	0.555
AIY15626.1	fadB	KR76_00440	KR76_00685	Enoyl-CoA hydratase.	Short chain enoyl-CoA hydratase [isoleucine degradation]/3-hydroxyacyl-CoA dehydrogenase.	0.526
AIY15626.1	menB	KR76_00440	KR76_02815	Enoyl-CoA hydratase.	Naphthoate synthase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA); Belongs to the enoyl-CoA hydratase/isomerase family. MenB subfamily.	0.604
AIY15626.1	paaG_2	KR76_00440	KR76_00425	Enoyl-CoA hydratase.	Enoyl-CoA hydratase.	0.650
AIY15626.1	paaG_6	KR76_00440	KR76_15860	Enoyl-CoA hydratase.	Enoyl-CoA hydratase.	0.519
AIY15691.1	AIY15725.2	KR76_00890	KR76_01145	Methylcrotonyl-CoA carboxylase carboxyl transferase subunit.	enoyl-CoA hydratase echA7.	0.447
AIY15691.1	AIY20186.2	KR76_00890	KR76_25620	Methylcrotonyl-CoA carboxylase carboxyl transferase subunit.	Enoyl-CoA hydratase.	0.422
AIY15691.1	AIY20228.2	KR76_00890	KR76_27320	Methylcrotonyl-CoA carboxylase carboxyl transferase subunit.	3-hydroxyisobutyryl-CoA hydrolase.	0.412
AIY15691.1	accD_1	KR76_00890	KR76_13740	Methylcrotonyl-CoA carboxylase carboxyl transferase subunit.	Acetyl-coenzyme A carboxyl transferase alpha chain.	0.434
AIY15691.1	accD_2	KR76_00890	KR76_23535	Methylcrotonyl-CoA carboxylase carboxyl transferase subunit.	Acetyl-coenzyme A carboxyl transferase alpha chain.	0.434
AIY15691.1	fadB	KR76_00890	KR76_00685	Methylcrotonyl-CoA carboxylase carboxyl transferase subunit.	Short chain enoyl-CoA hydratase [isoleucine degradation]/3-hydroxyacyl-CoA dehydrogenase.	0.511
AIY15725.2	AIY15691.1	KR76_01145	KR76_00890	enoyl-CoA hydratase echA7.	Methylcrotonyl-CoA carboxylase carboxyl transferase subunit.	0.447
AIY15725.2	AIY20186.2	KR76_01145	KR76_25620	enoyl-CoA hydratase echA7.	Enoyl-CoA hydratase.	0.628
AIY15725.2	AIY20198.2	KR76_01145	KR76_26120	enoyl-CoA hydratase echA7.	Methylcrotonyl-CoA carboxylase carboxyl transferase subunit.	0.406
AIY15725.2	paaG_6	KR76_01145	KR76_15860	enoyl-CoA hydratase echA7.	Enoyl-CoA hydratase.	0.490
AIY15867.2	AIY20186.2	KR76_02110	KR76_25620	enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	Enoyl-CoA hydratase.	0.549
AIY15867.2	fadB	KR76_02110	KR76_00685	enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	Short chain enoyl-CoA hydratase [isoleucine degradation]/3-hydroxyacyl-CoA dehydrogenase.	0.951
AIY15996.1	AIY16637.1	KR76_03105	KR76_07415	Enoyl-CoA hydratase.	Enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.934
AIY15996.1	AIY17619.1	KR76_03105	KR76_14215	Enoyl-CoA hydratase.	enoyl-CoA hydratase echA19.	0.932
AIY15996.1	AIY17646.1	KR76_03105	KR76_14360	Enoyl-CoA hydratase.	enoyl-CoA hydratase echA20.	0.977

page 1 of 10

Server load: low (34%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About