STRINGSTRING
HEAR0026 HEAR0026 HEAR0034 HEAR0034 HEAR0051 HEAR0051 HEAR0087 HEAR0087 HEAR0091 HEAR0091 HEAR0110 HEAR0110 lrp lrp HEAR0130 HEAR0130 HEAR0189 HEAR0189 fis fis HEAR0282 HEAR0282 HEAR0296 HEAR0296 HEAR0300 HEAR0300 HEAR0308 HEAR0308 HEAR0331 HEAR0331 HEAR0341 HEAR0341 HEAR0352 HEAR0352 HEAR0396 HEAR0396 dctR dctR rpoD rpoD HEAR0448 HEAR0448 HEAR0452 HEAR0452 aoxR aoxR phoB1 phoB1 arsR2 arsR2 HEAR0512 HEAR0512 HEAR0518 HEAR0518 cusR1 cusR1 HEAR0561 HEAR0561 HEAR0563 HEAR0563 HEAR0598 HEAR0598 HEAR0604 HEAR0604 HEAR0611 HEAR0611 HEAR0652 HEAR0652 HEAR0670 HEAR0670 HEAR0674 HEAR0674 HEAR0675 HEAR0675 alpA alpA HEAR0693 HEAR0693 ilvR ilvR HEAR0739 HEAR0739 HEAR0769 HEAR0769 HEAR0783 HEAR0783 HEAR0787 HEAR0787 HEAR0791 HEAR0791 HEAR0818 HEAR0818 cbl cbl HEAR0856 HEAR0856 HEAR0857 HEAR0857 HEAR0868 HEAR0868 HEAR0881 HEAR0881 HEAR0886 HEAR0886 HEAR0889 HEAR0889 HEAR0895 HEAR0895 HEAR0896 HEAR0896 HEAR0916 HEAR0916 glnG glnG HEAR0983 HEAR0983 HEAR1005 HEAR1005 HEAR1034 HEAR1034 nusB nusB HEAR1083 HEAR1083 phoB2 phoB2 greA greA HEAR1178 HEAR1178 HEAR1182 HEAR1182 HEAR1187 HEAR1187 HEAR1236 HEAR1236 rpoS rpoS hfq hfq flhD flhD flhC flhC HEAR1300 HEAR1300 cheY cheY fliA fliA HEAR1322 HEAR1322 norR norR HEAR1424 HEAR1424 HEAR1428 HEAR1428 HEAR1439 HEAR1439 HEAR1453 HEAR1453 HEAR1454 HEAR1454 HEAR1455 HEAR1455 HEAR1457 HEAR1457 HEAR1464 HEAR1464 HEAR1465 HEAR1465 HEAR1484 HEAR1484 cadR2 cadR2 cusR2 cusR2 HEAR1590 HEAR1590 cadR4 cadR4 kdpE kdpE anr anr HEAR1640 HEAR1640 narL narL nsrR nsrR HEAR1684 HEAR1684 HEAR1712 HEAR1712 HEAR1714 HEAR1714 HEAR1717 HEAR1717 HEAR1719 HEAR1719 HEAR1725 HEAR1725 HEAR1779 HEAR1779 HEAR1794 HEAR1794 ihfA ihfA HEAR1808 HEAR1808 HEAR1847 HEAR1847 vsrD1 vsrD1 HEAR1903 HEAR1903 ompR1 ompR1 mfd mfd phaR phaR arsR3 arsR3 HEAR1968 HEAR1968 HEAR2030 HEAR2030 frmR frmR HEAR2044 HEAR2044 HEAR2047 HEAR2047 HEAR2050 HEAR2050 HEAR2052 HEAR2052 HEAR2070 HEAR2070 rpoE rpoE qseB qseB HEAR2117 HEAR2117 HEAR2121 HEAR2121 greB greB HEAR2137 HEAR2137 HEAR2139 HEAR2139 putA putA lexA lexA HEAR2200 HEAR2200 iscR iscR HEAR2292 HEAR2292 HEAR2329 HEAR2329 fnr fnr nrdR nrdR cysB cysB nusA nusA HEAR2459 HEAR2459 ddh ddh HEAR2504 HEAR2504 HEAR2519 HEAR2519 vsrD2 vsrD2 HEAR2521 HEAR2521 ihfB ihfB HEAR2622 HEAR2622 tctD tctD hrcA hrcA fur fur HEAR2683 HEAR2683 HEAR2689 HEAR2689 HEAR2729 HEAR2729 pyrR pyrR pilH pilH pilG pilG pilR pilR yacG yacG mraZ mraZ HEAR2824 HEAR2824 rpoH rpoH HEAR2928 HEAR2928 HEAR2958 HEAR2958 ompR2 ompR2 HEAR2991 HEAR2991 HEAR3054 HEAR3054 rpoN rpoN nusG nusG HEAR3184 HEAR3184 HEAR3198 HEAR3198 arsR4 arsR4 HEAR3215 HEAR3215 HEAR3233 HEAR3233 HEAR3251 HEAR3251 prpR prpR HEAR3275 HEAR3275 HEAR3276 HEAR3276 hmrR hmrR arsR1 arsR1 HEAR3310 HEAR3310 HEAR3324 HEAR3324 HEAR3334 HEAR3334 HEAR3381 HEAR3381 HEAR3424 HEAR3424 fdsR fdsR modE2 modE2 HEAR3441 HEAR3441 HEAR3451 HEAR3451
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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HEAR0026Putative Transcriptional regulatory protein with PAS domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (234 aa)
HEAR0034Putative transcription elongation factor GreB; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor; Belongs to the GreA/GreB family. (193 aa)
HEAR0051Putative Two-component system regulatory protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (227 aa)
HEAR0087Putative Transcriptional regulator, GntR family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (249 aa)
HEAR0091Putative Transcriptional regulator, GntR family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (257 aa)
HEAR0110DNA-3-methyladenine glycosylase 2; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (500 aa)
lrpLeucine-responsive regulatory protein; Function of homologous gene experimentally demonstrated in an other organism; regulator. (155 aa)
HEAR0130Putative two-component response regulator containing CheY-like receiver; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (236 aa)
HEAR0189Putative two component system, response regulator CheY-like; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (229 aa)
fisFis family transcriptional regulator, factor for inversion stimulation protein; Function of homologous gene experimentally demonstrated in an other organism; regulator; Belongs to the transcriptional regulatory Fis family. (77 aa)
HEAR0282Putative transcription regulator protein, LysR family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Belongs to the LysR transcriptional regulatory family. (299 aa)
HEAR0296Putative circadian clock protein KaiC; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (480 aa)
HEAR0300Putative LysR-family transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Belongs to the LysR transcriptional regulatory family. (315 aa)
HEAR0308Putative transcriptional regulator, MarR family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (149 aa)
HEAR0331Putative Bacterial regulatory protein, LysR; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Belongs to the LysR transcriptional regulatory family. (301 aa)
HEAR0341Transcriptional regulatory protein, LysR family; Function of strongly homologous gene; regulator; Belongs to the LysR transcriptional regulatory family. (367 aa)
HEAR0352Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (202 aa)
HEAR0396Putative Transcriptional regulatory protein ompR; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (236 aa)
dctRC4-dicarboxylate transport transcriptional regulatory protein DctR; Function of homologous gene experimentally demonstrated in an other organism; regulator. (196 aa)
rpoDPutative RNA polymerase sigma factor rpoD (Sigma-70); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. (800 aa)
HEAR0448Putative transcriptional regulator, LysR family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Belongs to the LysR transcriptional regulatory family. (287 aa)
HEAR0452Putative LysR-family transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Belongs to the LysR transcriptional regulatory family. (305 aa)
aoxRAoxR regulatory protein; Function of homologous gene experimentally demonstrated in an other organism; regulator. (454 aa)
phoB1Phosphate regulon transcriptional regulatory protein PhoB; Function of homologous gene experimentally demonstrated in an other organism; regulator. (229 aa)
arsR2Arsenical resistance transcriptional regulator; Function of homologous gene experimentally demonstrated in an other organism; regulator. (111 aa)
HEAR0512Putative transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (78 aa)
HEAR0518Putative transcription regulator protein (CadR and PbrR family); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (143 aa)
cusR1Transcriptional regulatory protein CusR; Function of homologous gene experimentally demonstrated in an other organism; regulator. (227 aa)
HEAR0561Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (242 aa)
HEAR0563Putative LysR-type regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Belongs to the LysR transcriptional regulatory family. (300 aa)
HEAR0598Putative two-component system response regulator LuxR family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (232 aa)
HEAR0604Heavy metal response transcriptional activator protein; Function of homologous gene experimentally demonstrated in an other organism; regulator. (231 aa)
HEAR0611Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (474 aa)
HEAR0652Putative transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (151 aa)
HEAR0670Putative sigma-54 dependent transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (550 aa)
HEAR0674Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (151 aa)
HEAR0675Putative transcriptional regulator aminotransferase GntR; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (469 aa)
alpAProphage CP4-57 regulatory protein alpA; Function of homologous gene experimentally demonstrated in an other organism; regulator. (73 aa)
HEAR0693Putative transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (134 aa)
ilvRHTH-type transcriptional regulator ilvR (Isoleucine biosynthesis transcriptional activator); Function of homologous gene experimentally demonstrated in an other organism; regulator; Belongs to the LysR transcriptional regulatory family. (297 aa)
HEAR0739Putative Bacterial regulatory proteins, AsnC/Lrp; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (169 aa)
HEAR0769Putative transcriptional regulator (LysR family); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Belongs to the LysR transcriptional regulatory family. (305 aa)
HEAR0783Putative transcription regulator aminotransferase GntR-related; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (486 aa)
HEAR0787Putative aminotransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (397 aa)
HEAR0791Hypothetical protein, putative pilus protein; No homology to any previously reported sequences. (276 aa)
HEAR0818Putative transcriptional regulator (IclR family); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (245 aa)
cblHTH-type transcriptional regulator CysB-like; Function of homologous gene experimentally demonstrated in an other organism; regulator; Belongs to the LysR transcriptional regulatory family. (308 aa)
HEAR0856Putative RNA polymerase sigma factor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor; Belongs to the sigma-70 factor family. ECF subfamily. (184 aa)
HEAR0857Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (232 aa)
HEAR0868Putative deacetylase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (434 aa)
HEAR0881Putative lysR-family transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Belongs to the LysR transcriptional regulatory family. (284 aa)
HEAR0886Putative methionyl-tRNA formyl transferase, partial; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (387 aa)
HEAR0889Putative two-component system sensory histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (478 aa)
HEAR0895Putative two-component system sensory histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (1692 aa)
HEAR0896Putative two-component sensor protein histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor. (560 aa)
HEAR0916Putative transcriptional regulator (ArsR family); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (108 aa)
glnGNitrogen regulation protein NR(I); Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. (510 aa)
HEAR0983Putative transcription regulators (MarR family); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (163 aa)
HEAR1005Putative two component system response regulator (LytR/AlgR family); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor. (267 aa)
HEAR1034Putative Bacterial regulatory protein, Crp; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (285 aa)
nusBN utilization substance protein B homolog (Protein NusB); Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. (156 aa)
HEAR1083Putative HTH-type transcriptional regulator HexR (Hex regulon repressor); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (283 aa)
phoB2Phosphate regulon transcriptional regulatory protein PhoB; Function of homologous gene experimentally demonstrated in an other organism; regulator. (229 aa)
greATranscription elongation factor greA (Transcript cleavage factor greA); Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. (157 aa)
HEAR1178Putative transcriptional regulator, LysR family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Belongs to the LysR transcriptional regulatory family. (304 aa)
HEAR1182Putative Transcriptional regulator, GntR family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (248 aa)
HEAR1187Putative Bacterial regulatory protein, arsR family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (123 aa)
HEAR1236Putative RNA polymerase sigma factor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor; Belongs to the sigma-70 factor family. ECF subfamily. (189 aa)
rpoSRNA polymerase sigma factor rpoS (Sigma-38); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response. (344 aa)
hfqProtein Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. (78 aa)
flhDTranscriptional activator FlhD; Functions in complex with FlhC as a master transcriptional regulator that regulates transcription of several flagellar and non- flagellar operons by binding to their promoter region. Activates expression of class 2 flagellar genes, including fliA, which is a flagellum-specific sigma factor that turns on the class 3 genes. Also regulates genes whose products function in a variety of physiological pathways; Belongs to the FlhD family. (105 aa)
flhCFlagellar transcriptional activator FlhC; Functions in complex with FlhD as a master transcriptional regulator that regulates transcription of several flagellar and non- flagellar operons by binding to their promoter region. Activates expression of class 2 flagellar genes, including fliA, which is a flagellum-specific sigma factor that turns on the class 3 genes. Also regulates genes whose products function in a variety of physiological pathways; Belongs to the FlhC family. (182 aa)
HEAR1300Putative chemotaxis protein CheY; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (121 aa)
cheYChemotaxis protein CheY; Function of homologous gene experimentally demonstrated in an other organism; regulator. (132 aa)
fliARNA polymerase sigma factor for flagellar operon (Sigma-F factor) (Sigma-27) (Sigma-28); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily. (243 aa)
HEAR1322Conserved hypothetical protein, putative ArsC family; Homologs of previously reported genes of unknown function; Belongs to the ArsC family. (117 aa)
norRAnaerobic nitric oxide reductase transcription regulator NorR; Function of homologous gene experimentally demonstrated in an other organism; regulator. (508 aa)
HEAR1424Putative Bacterial regulatory protein, MarR; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (144 aa)
HEAR1428Putative transcriptional regulator (ArsR family); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (98 aa)
HEAR1439Putative chaperone-modulator protein CbpM; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (105 aa)
HEAR1453Putative two-component sensor kinase (N part); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor. (499 aa)
HEAR1454Putative two-component sensor kinase (C part); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor. (577 aa)
HEAR1455Two-component response regulator, LuxR family; Function of strongly homologous gene; regulator. (315 aa)
HEAR1457Putative transcription elongation factor GreA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor. (139 aa)
HEAR1464Putative Bacterial regulatory protein, LysR; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Belongs to the LysR transcriptional regulatory family. (305 aa)
HEAR1465Transcriptional regulatory proteins, GntR family; Function of strongly homologous gene; regulator. (220 aa)
HEAR1484Putative RNA polymerase sigma factor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor; Belongs to the sigma-70 factor family. ECF subfamily. (231 aa)
cadR2Cd(II)/Pb(II)-responsive transcriptional regulator; Function of homologous gene experimentally demonstrated in an other organism; regulator. (145 aa)
cusR2Transcriptional regulatory protein CusR; Function of homologous gene experimentally demonstrated in an other organism; regulator. (230 aa)
HEAR1590Putative transcription regulator protein (CadR and PbrR family); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (143 aa)
cadR4Transcriptional regulator (CadR); Function of homologous gene experimentally demonstrated in an other organism; regulator. (151 aa)
kdpEKDP operon transcriptional regulatory protein KdpE; Function of homologous gene experimentally demonstrated in an other organism; regulator. (232 aa)
anrTranscriptional activator protein anr; Function of homologous gene experimentally demonstrated in an other organism; regulator. (251 aa)
HEAR1640Putative ferredoxin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; cell process. (472 aa)
narLNitrate/nitrite response regulator protein; Function of homologous gene experimentally demonstrated in an other organism; regulator. (235 aa)
nsrRHTH-type transcriptional regulator nsrR; Function of homologous gene experimentally demonstrated in an other organism; regulator. (159 aa)
HEAR1684Putative regulatory protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (228 aa)
HEAR1712Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (154 aa)
HEAR1714Putative Bacterial regulatory protein, MarR; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (144 aa)
HEAR1717Putative Bacterial regulatory protein, LysR family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Belongs to the LysR transcriptional regulatory family. (293 aa)
HEAR1719Putative methyl accepting chemotaxis protein (part 1); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (89 aa)
HEAR1725Putative transcriptional regulator, AraC family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (366 aa)
HEAR1779Transcriptional regulator, GntR family; Function of strongly homologous gene; regulator. (312 aa)
HEAR1794Putative transcriptional regulatory protein MerR family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (129 aa)
ihfAIntegration host factor subunit alpha (IHF-alpha); This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. (151 aa)
HEAR1808Transcriptional regulator, LuxR family; Function of strongly homologous gene; regulator. (185 aa)
HEAR1847Putative RNA polymerase sigma-70 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (808 aa)
vsrD1Response regulator receiver, LuxR family; Function of homologous gene experimentally demonstrated in an other organism; regulator. (215 aa)
HEAR1903Putative negative regulator of flagellin synthesis (Anti-sigma-28 factor) FlgM-like; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure. (102 aa)
ompR1Transcriptional regulatory protein OmpR; Function of strongly homologous gene; regulator. (255 aa)
mfdTranscription-repair-coupling factor (TRCF) (ATP-dependent helicase Mfd); Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. (1148 aa)
phaRPolyhydroxyalkanoate synthesis repressor PhaR; Function of strongly homologous gene; regulator. (190 aa)
arsR3Arsenical resistance transcriptional regulator, arsR; Function of homologous gene experimentally demonstrated in an other organism; regulator. (107 aa)
HEAR1968Putative prophage CP4-57 regulatory protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (73 aa)
HEAR2030Conserved hypothetical protein, putative transcriptional regulator; Homologs of previously reported genes of unknown function. (105 aa)
frmRRepressor FrmR; Function of homologous gene experimentally demonstrated in an other organism; regulator. (91 aa)
HEAR2044Putative transcriptional regulator, LysR family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Belongs to the LysR transcriptional regulatory family. (301 aa)
HEAR2047Putative transcription regulator, LysR family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Belongs to the LysR transcriptional regulatory family. (313 aa)
HEAR2050Putative transcriptional regulator, LysR family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Belongs to the LysR transcriptional regulatory family. (296 aa)
HEAR2052Putative transcriptional regulator, LysR family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (301 aa)
HEAR2070Putative anti sigma-E protein RseA, N-terminal; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (186 aa)
rpoERNA polymerase sigma-E factor (Sigma-24); Function of homologous gene experimentally demonstrated in an other organism; factor; Belongs to the sigma-70 factor family. ECF subfamily. (200 aa)
qseBTranscriptional regulatory protein QseB; Function of homologous gene experimentally demonstrated in an other organism; regulator. (220 aa)
HEAR2117Putative plasmid stable inheritance protein I PemI-like; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor. (81 aa)
HEAR2121Putative transcriptional regulator, LysR family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Belongs to the LysR transcriptional regulatory family. (294 aa)
greBTranscription elongation factor GreB (Transcript cleavage factor GreB); Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length. (182 aa)
HEAR2137Putative HTH-type transcriptional regulator metR; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Belongs to the LysR transcriptional regulatory family. (306 aa)
HEAR2139Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (131 aa)
putABifunctional protein putA: Proline dehydrogenase (Proline oxidase); Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. (1224 aa)
lexALexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. (219 aa)
HEAR2200Putative transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (313 aa)
iscRIron-sulfur cluster assembly transcription factor IscR; Function of strongly homologous gene; regulator. (157 aa)
HEAR2292Hypothetical protein; No homology to any previously reported sequences. (261 aa)
HEAR2329Putative transcriptional regulator LysR family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Belongs to the LysR transcriptional regulatory family. (293 aa)
fnrFumarate and nitrate reduction regulatory protein; Function of homologous gene experimentally demonstrated in an other organism; regulator. (282 aa)
nrdRTranscriptional repressor NrdR; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family. (156 aa)
cysBHTH-type transcriptional regulator cysB (Cys regulon transcriptional activator); Function of homologous gene experimentally demonstrated in an other organism; regulator; Belongs to the LysR transcriptional regulatory family. (313 aa)
nusATranscription elongation protein nusA (N utilization substance protein A) (L factor); Participates in both transcription termination and antitermination. (519 aa)
HEAR2459Putative transcriptional regulator, GntR family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (232 aa)
ddhMeso-diaminopimelate D-dehydrogenase; Catalyzes the reversible NADPH-dependent reductive amination of L-2-amino-6-oxopimelate, the acyclic form of L- tetrahydrodipicolinate, to generate the meso compound, D,L-2,6- diaminopimelate. (328 aa)
HEAR2504Putative regulatory protein, LysR family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Belongs to the LysR transcriptional regulatory family. (296 aa)
HEAR2519Conserved hypothetical protein, sigma-54 interaction domain; Homologs of previously reported genes of unknown function. (363 aa)
vsrD2Response regulator receiver, LuxR family; Function of homologous gene experimentally demonstrated in an other organism; regulator. (210 aa)
HEAR2521Putative two-component response regulator CheY-like; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (141 aa)
ihfBIntegration host factor subunit beta (IHF-beta); This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. (101 aa)
HEAR2622Deacetylase; Function of strongly homologous gene; enzyme. (310 aa)
tctDTranscriptional regulatory protein TctD; Function of homologous gene experimentally demonstrated in an other organism; regulator. (233 aa)
hrcAHeat-inducible transcription repressor HrcA; Negative regulator of class I heat shock genes (grpE-dnaK- dnaJ and groELS operons). Prevents heat-shock induction of these operons. (342 aa)
furFerric uptake regulation protein (Ferric uptake regulator); Function of homologous gene experimentally demonstrated in an other organism; regulator; Belongs to the Fur family. (140 aa)
HEAR2683Putative regulatory proteins IclR family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (285 aa)
HEAR2689Putative transcriptional regulatory protein TctD; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (229 aa)
HEAR2729Putative GntR-family transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (247 aa)
pyrRBifunctional protein PyrR [Includes: Pyrimidine operon regulatory protein; Function of homologous gene experimentally demonstrated in an other organism; regulator. (172 aa)
pilHTwitching motility two-component response regulator transcription regulator protein PilH; Function of homologous gene experimentally demonstrated in an other organism; regulator. (121 aa)
pilGType IV pilus response regulator PilG; Function of homologous gene experimentally demonstrated in an other organism; regulator. (133 aa)
pilRType 4 fimbriae expression regulatory protein; Function of homologous gene experimentally demonstrated in an other organism; regulator. (478 aa)
yacGConserved hypothetical protein; Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C- terminal domain of GyrB, which probably disrupts DNA binding by the gyrase. (66 aa)
mraZConserved hypothetical protein, MraZ family; Homologs of previously reported genes of unknown function; Belongs to the MraZ family. (142 aa)
HEAR2824Putative aminotransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (470 aa)
rpoHRNA polymerase sigma-32 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes. (298 aa)
HEAR2928Putative Two-component system regulatory protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (229 aa)
HEAR2958Putative ferric-uptake regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Belongs to the Fur family. (199 aa)
ompR2Transcriptional regulatory protein OmpR; Function of homologous gene experimentally demonstrated in an other organism; regulator. (233 aa)
HEAR2991Putative bifunctional protein birA [Includes: Biotin operon repressor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (263 aa)
HEAR3054Response regulatory protein; Function of strongly homologous gene; regulator. (238 aa)
rpoNRNA polymerase, sigma 54 (sigma N) factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (489 aa)
nusGTranscription antitermination protein NusG; Participates in transcription elongation, termination and antitermination. (192 aa)
HEAR3184Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (578 aa)
HEAR3198Transcriptional regulator, AsnC family; Function of strongly homologous gene; regulator. (157 aa)
arsR4Arsenical resistance transcriptional regulator; Function of homologous gene experimentally demonstrated in an other organism; regulator. (112 aa)
HEAR3215Putative HTH-type transcriptional regulator protein PtxE-like; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Belongs to the LysR transcriptional regulatory family. (285 aa)
HEAR3233Putative transcriptional regulatory protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (248 aa)
HEAR3251Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (198 aa)
prpRPropionate catabolism operon regulatory protein; Function of homologous gene experimentally demonstrated in an other organism; regulator. (550 aa)
HEAR3275Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (267 aa)
HEAR3276Putative RNA polymerase sigma factor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the sigma-70 factor family. ECF subfamily. (168 aa)
hmrRHTH-type transcriptional regulator cueR (Copper efflux regulator) (Copper export regulator); Function of homologous gene experimentally demonstrated in an other organism; regulator. (139 aa)
arsR1Arsenical resistance transcriptional regulator; Function of homologous gene experimentally demonstrated in an other organism; regulator. (117 aa)
HEAR3310Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (106 aa)
HEAR3324Putative regulator protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (247 aa)
HEAR3334Putative regulator protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (248 aa)
HEAR3381Putative transcriptional regulator, MarR family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (156 aa)
HEAR3424Putative transcriptional regulator, LysR family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Belongs to the LysR transcriptional regulatory family. (319 aa)
fdsRFormate dehydrogenase regulator; Function of homologous gene experimentally demonstrated in an other organism; regulator. (361 aa)
modE2Molybdenum transport protein ModE; Function of homologous gene experimentally demonstrated in an other organism; transporter. (300 aa)
HEAR3441Putative transcriptional regulator, LysR family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Belongs to the LysR transcriptional regulatory family. (312 aa)
HEAR3451Putative MFS permease-like protein (C part); Gene remnant; putative transporter. (474 aa)
Your Current Organism:
Herminiimonas arsenicoxydans
NCBI taxonomy Id: 204773
Other names: CCM 7303, DSM 17148, H. arsenicoxydans, Herminiimonas arsenicoxydans Muller et al. 2006, LMG 22961, LMG:22961, strain ULPAs1
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