STRINGSTRING
HEAR0644 HEAR0644 mtnN mtnN HEAR3395 HEAR3395 ectD ectD HEAR3371 HEAR3371 uxaA uxaA HEAR3336 HEAR3336 HEAR3315 HEAR3315 HEAR3312 HEAR3312 HEAR3277 HEAR3277 HEAR3273 HEAR3273 HEAR3260 HEAR3260 amaB amaB deaD deaD HEAR3119 HEAR3119 HEAR3061 HEAR3061 HEAR2996 HEAR2996 HEAR2951 HEAR2951 HEAR2897 HEAR2897 HEAR2838 HEAR2838 HEAR2837 HEAR2837 rppH rppH HEAR2759 HEAR2759 HEAR2724 HEAR2724 HEAR2678 HEAR2678 HEAR2674 HEAR2674 HEAR2667 HEAR2667 HEAR2636 HEAR2636 HEAR2629 HEAR2629 HEAR2542 HEAR2542 xseA xseA HEAR2479 HEAR2479 HEAR2460 HEAR2460 bpt bpt HEAR2328 HEAR2328 gloB gloB rnhA rnhA HEAR2266 HEAR2266 HEAR2182 HEAR2182 rhlE2 rhlE2 putA putA HEAR2129 HEAR2129 rph rph HEAR2125 HEAR2125 HEAR2098 HEAR2098 rne rne frmB frmB pnp pnp phaZ3 phaZ3 sucB sucB dadA2 dadA2 HEAR1741 HEAR1741 HEAR1696 HEAR1696 dbpA dbpA HEAR1507 HEAR1507 HEAR1476 HEAR1476 mdcA mdcA nemA nemA HEAR1383 HEAR1383 HEAR1371 HEAR1371 rnhB rnhB surE surE katA katA HEAR1199 HEAR1199 HEAR1195 HEAR1195 HEAR1185 HEAR1185 HEAR1181 HEAR1181 iorB iorB iorA iorA edd edd frmC frmC aidB aidB HEAR0995 HEAR0995 fpr fpr HEAR0913 HEAR0913 HEAR0911 HEAR0911 HEAR0851 HEAR0851 coaB coaB dut dut HEAR0798 HEAR0798 dehH dehH dadA1 dadA1 HEAR0672 HEAR0672 fadE fadE HEAR0614 HEAR0614 blaA blaA HEAR0601 HEAR0601 rhlE1 rhlE1 nasD nasD HEAR0400 HEAR0400 HEAR0385 HEAR0385 gloA gloA HEAR0360 HEAR0360 glxR glxR gcl gcl xseB xseB HEAR0270 HEAR0270 HEAR0260 HEAR0260 dtd dtd anmK anmK HEAR0217 HEAR0217 glpK glpK mvaB mvaB HEAR0098 HEAR0098 HEAR0067 HEAR0067
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
Your Input:
HEAR0644Putative rubredoxin-NAD(+) reductase NorW-like; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (403 aa)
mtnN5'-Methylthioadenosine/S-adenosylhomocysteine (SAH) nucleosidase; Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S-adenosylhomocysteine (SAH/AdoHcy) to adenine and the corresponding thioribose, 5'- methylthioribose and S-ribosylhomocysteine, respectively. Belongs to the PNP/UDP phosphorylase family. MtnN subfamily. (262 aa)
HEAR3395Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (170 aa)
ectDEctoine hydroxylase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (306 aa)
HEAR3371Conserved hypothetical protein, putative SlyX domain; Homologs of previously reported genes of unknown function. (68 aa)
uxaAAltronate dehydratase; Function of strongly homologous gene; enzyme. (389 aa)
HEAR3336Altronate dehydratase (N part); Function of strongly homologous gene; enzyme. (93 aa)
HEAR3315Putative deoxygenases; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (263 aa)
HEAR3312Putative 2,5-didehydrogluconate reductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (277 aa)
HEAR3277Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (124 aa)
HEAR3273Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (115 aa)
HEAR3260Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (164 aa)
amaBN-carbamoyl-L-amino acid hydrolase (L-carbamoylase); Function of strongly homologous gene; enzyme. (432 aa)
deaDPutative ATP-dependent RNA helicase DeaD-like; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. (826 aa)
HEAR3119Deoxyguanosinetriphosphate triphosphohydrolase; Function of strongly homologous gene; enzyme; Belongs to the dGTPase family. Type 2 subfamily. (382 aa)
HEAR3061Histidine triad (HIT) protein; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (124 aa)
HEAR2996Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (383 aa)
HEAR2951Putative carboxypeptidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (317 aa)
HEAR2897Putative molybdopterin cofactor sulfurase-related; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (283 aa)
HEAR2838Putative butyryl-CoA dehydrogenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (596 aa)
HEAR2837Putative bifunctionnal protein 3-hydroxyacyl-CoA dehydrogenase and dodecenoyl-CoA isomerase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (799 aa)
rppHPutative (di)nucleoside polyphosphate hydrolase NudH-like; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily. (193 aa)
HEAR2759Conserved hypothetical protein, putative nucleotidyltransferase domain; Homologs of previously reported genes of unknown function. (206 aa)
HEAR2724Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (380 aa)
HEAR2678Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (233 aa)
HEAR2674Putative gamma-glutamyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (565 aa)
HEAR2667Putative DSBA oxidoreductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (200 aa)
HEAR2636Putative hydrolase, haloacid dehalogenase-like family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (224 aa)
HEAR2629Hypothetical protein, putative ribonuclease H domain; No homology to any previously reported sequences. (222 aa)
HEAR2542Putative nitroreductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (188 aa)
xseAExodeoxyribonuclease 7 large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. (453 aa)
HEAR2479Putative gamma-glutamyltranspeptidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (597 aa)
HEAR2460Gamma-glutamyltransferase; Function of strongly homologous gene; enzyme. (531 aa)
bptPutative arginyl-tRNA--protein transferase (R-transferase) (Arginyltransferase) Ate-like; Functions in the N-end rule pathway of protein degradation where it conjugates Leu from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate. Belongs to the R-transferase family. Bpt subfamily. (241 aa)
HEAR2328Putative ATP-dependent RNA helicase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the DEAD box helicase family. (468 aa)
gloBPutative hydroxyacylglutathione hydrolase (Glyoxalase II) (Glx II) GloB-like; Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid. (259 aa)
rnhARibonuclease HI (RNase HI); Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (146 aa)
HEAR2266Putative phage lysozyme; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (147 aa)
HEAR2182Putative alpha/beta hydrolase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (290 aa)
rhlE2ATP-dependent RNA helicase; DEAD-box RNA helicase involved in ribosome assembly. Has RNA- dependent ATPase activity and unwinds double-stranded RNA. (449 aa)
putABifunctional protein putA: Proline dehydrogenase (Proline oxidase); Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. (1224 aa)
HEAR2129Conserved hypothetical protein, putative stress-induced protein; Homologs of previously reported genes of unknown function. (300 aa)
rphRibonuclease PH (RNase PH) (tRNA nucleotidyltransferase); Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. (244 aa)
HEAR2125HAM1 protein homolog; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family. (194 aa)
HEAR2098Putative phosphatase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (238 aa)
rneRibonuclease E (RNase E); Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily. (973 aa)
frmBS-formylglutathione hydrolase; Serine hydrolase involved in the detoxification of formaldehyde. (276 aa)
pnpPolyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase); Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. (710 aa)
phaZ3Poly(3-hydroxybutyrate) depolymerase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (269 aa)
sucBDihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2). (414 aa)
dadA2D-amino acid dehydrogenase, small subunit; Function of strongly homologous gene; enzyme. (414 aa)
HEAR1741Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (134 aa)
HEAR1696Conserved hypothetical protein, induce by arsenic; Homologs of previously reported genes of unknown function. (780 aa)
dbpAATP-dependent RNA helicase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the DEAD box helicase family. (464 aa)
HEAR1507Putative alpha/beta-Hydrolase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (230 aa)
HEAR1476Putative 5'-nucleotidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the 5'-nucleotidase family. (596 aa)
mdcAMalonate decarboxylase, alpha subunit; Function of strongly homologous gene; enzyme. (550 aa)
nemAN-ethylmaleimide reductase, FMN-linked; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (352 aa)
HEAR1383Putative alpha/beta hydrolase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (305 aa)
HEAR1371Putative cytochrome c precursor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier. (165 aa)
rnhBRibonuclease HII (RNase HII); Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family. (211 aa)
surE5'-nucleotidase SurE (Nucleoside 5'-monophosphate phosphohydrolase); Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family. (245 aa)
katACatalase (hydroperoxidase II); Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the catalase family. (478 aa)
HEAR1199Putative fumarylacetoacetate (FAA) hydrolase family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (264 aa)
HEAR1195Putative sulfur oxidation protein SoxB; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the 5'-nucleotidase family. (572 aa)
HEAR1185Putative Beta lactamase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (323 aa)
HEAR1181Conserved hypothetical protein, putative xanthine dehydrogenase; Homologs of previously reported genes of unknown function. (355 aa)
iorBIsoquinoline 1-oxidoreductase, beta subunit; Function of strongly homologous gene; enzyme. (779 aa)
iorAIsoquinoline 1-oxidoreductase alpha subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (196 aa)
edd6-phosphogluconate dehydratase; Catalyzes the dehydration of 6-phospho-D-gluconate to 2- dehydro-3-deoxy-6-phospho-D-gluconate; Belongs to the IlvD/Edd family. (637 aa)
frmCS-formylglutathione hydrolase; Serine hydrolase involved in the detoxification of formaldehyde. (280 aa)
aidBIsovaleryl CoA dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (551 aa)
HEAR0995Carboxylesterase; Function of strongly homologous gene; enzyme. (220 aa)
fprferredoxin--NADP+ reductase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (259 aa)
HEAR0913Hypothetical protein; No homology to any previously reported sequences. (96 aa)
HEAR0911Conserved hypothetical protein, putative pyrophosphatase; Homologs of previously reported genes of unknown function. (109 aa)
HEAR0851Putative fumarylacetoacetate (FAA) hydrolase family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (229 aa)
coaBCoenzyme A biosynthesis bifunctional protein CoaBC; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family. (396 aa)
dutDeoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) (dUTP pyrophosphatase); This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family. (149 aa)
HEAR0798Putative NADH dehydrogenase/NAD(P)H nitroreductase RutE (Pyrimidine utilization protein E); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (205 aa)
dehHHaloacetate dehalogenase; Function of strongly homologous gene; enzyme. (308 aa)
dadA1D-amino acid dehydrogenase small subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (443 aa)
HEAR0672Putative Nitroreductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (200 aa)
fadEAcyl-CoA dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (596 aa)
HEAR0614Gamma-glutamyltranspeptidase; Function of strongly homologous gene; enzyme. (532 aa)
blaAClass A beta-lactamase precursor (Penicillinase); Function of homologous gene experimentally demonstrated in an other organism; enzyme. (299 aa)
HEAR0601Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (271 aa)
rhlE1ATP-dependent RNA helicase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the DEAD box helicase family. (502 aa)
nasDNitrite reductase [NAD(P)H], large subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. (809 aa)
HEAR0400Putative metal dependent amidohydrolase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (581 aa)
HEAR0385Putative enzyme involved in biosynthesis of extracellular polysaccharides; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (115 aa)
gloALactoylglutathione lyase; Catalyzes the conversion of hemimercaptal, formed from methylglyoxal and glutathione, to S-lactoylglutathione. (139 aa)
HEAR0360Putative D-amino acid dehydrogenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (442 aa)
glxR2-hydroxy-3-oxopropionate reductase (Tartronate semialdehyde reductase) (TSAR); Function of homologous gene experimentally demonstrated in an other organism; enzyme. (295 aa)
gclGlyoxylate carboligase (Tartronate-semialdehyde synthase); Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the TPP enzyme family. (582 aa)
xseBExodeoxyribonuclease VII small subunit (Exonuclease VII small subunit) (XseB); Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. (84 aa)
HEAR0270Putative carboxymethylenebutenolidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (294 aa)
HEAR0260Putative 2-keto-4-pentenoate hydratase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (280 aa)
dtdD-tyrosyl-tRNA(Tyr) deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family. (149 aa)
anmKAnhydro-N-acetylmuramic acid kinase; Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling; Belongs to the anhydro-N-acetylmuramic acid kinase family. (379 aa)
HEAR0217Putative 2-hydroxy-3-oxopropionate reductase glxR-like (Tartronate semialdehyde reductase) (TSAR); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (287 aa)
glpKGlycerol kinase (ATP:glycerol 3-phosphotransferase) (Glycerokinase) (GK); Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family. (498 aa)
mvaBHydroxymethylglutaryl-CoA lyase (HMG-CoA lyase) (HL) (3-hydroxy-3-methylglutarate-CoA lyase); Function of homologous gene experimentally demonstrated in an other organism; enzyme. (305 aa)
HEAR0098Putative Metallo-beta-lactamase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (354 aa)
HEAR0067Putative enzyme involved in biosynthesis of extracellular polysaccharides; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (100 aa)
Your Current Organism:
Herminiimonas arsenicoxydans
NCBI taxonomy Id: 204773
Other names: CCM 7303, DSM 17148, H. arsenicoxydans, Herminiimonas arsenicoxydans Muller et al. 2006, LMG 22961, LMG:22961, strain ULPAs1
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