(10 nodes) mRNA cleavage and polyadenylation specificity factor complex network (Mastacembelus armatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	cpsf1	Cleavage and polyadenylation specific factor 1. (1472 aa)
	ENSMAMP00000006080	Uncharacterized protein. (204 aa)
	cpsf2	Cleavage and polyadenylation specificity factor subunit 2. (787 aa)
	fip1l1	FIP1 like 1b (S. cerevisiae). (539 aa)
	cpsf4	Cleavage and polyadenylation specific factor 4. (267 aa)
	CPSF3	Cleavage and polyadenylation specific factor 3. (632 aa)
	sympk	Symplekin. (1219 aa)
	ENSMAMP00000028269	WD repeat domain 33. (287 aa)
	LOC113130149	WD_REPEATS_REGION domain-containing protein. (315 aa)
	ssu72	SSU72 homolog, RNA polymerase II CTD phosphatase. (194 aa)

Your Current Organism:

Mastacembelus armatus

NCBI taxonomy Id: 205130
Other names: M. armatus, Macrognathus armatus, zig-zag eel

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CPSF3	ENSMAMP00000006080	ENSMAMP00000013050	ENSMAMP00000006080	Cleavage and polyadenylation specific factor 3.	Uncharacterized protein.	0.943
CPSF3	ENSMAMP00000028269	ENSMAMP00000013050	ENSMAMP00000028269	Cleavage and polyadenylation specific factor 3.	WD repeat domain 33.	0.977
CPSF3	LOC113130149	ENSMAMP00000013050	ENSMAMP00000035476	Cleavage and polyadenylation specific factor 3.	WD_REPEATS_REGION domain-containing protein.	0.975
CPSF3	cpsf1	ENSMAMP00000013050	ENSMAMP00000005790	Cleavage and polyadenylation specific factor 3.	Cleavage and polyadenylation specific factor 1.	0.992
CPSF3	cpsf2	ENSMAMP00000013050	ENSMAMP00000006245	Cleavage and polyadenylation specific factor 3.	Cleavage and polyadenylation specificity factor subunit 2.	0.995
CPSF3	cpsf4	ENSMAMP00000013050	ENSMAMP00000009273	Cleavage and polyadenylation specific factor 3.	Cleavage and polyadenylation specific factor 4.	0.991
CPSF3	fip1l1	ENSMAMP00000013050	ENSMAMP00000006653	Cleavage and polyadenylation specific factor 3.	FIP1 like 1b (S. cerevisiae).	0.991
CPSF3	ssu72	ENSMAMP00000013050	ENSMAMP00000035538	Cleavage and polyadenylation specific factor 3.	SSU72 homolog, RNA polymerase II CTD phosphatase.	0.975
CPSF3	sympk	ENSMAMP00000013050	ENSMAMP00000015436	Cleavage and polyadenylation specific factor 3.	Symplekin.	0.985
ENSMAMP00000006080	CPSF3	ENSMAMP00000006080	ENSMAMP00000013050	Uncharacterized protein.	Cleavage and polyadenylation specific factor 3.	0.943
ENSMAMP00000006080	ENSMAMP00000028269	ENSMAMP00000006080	ENSMAMP00000028269	Uncharacterized protein.	WD repeat domain 33.	0.946
ENSMAMP00000006080	LOC113130149	ENSMAMP00000006080	ENSMAMP00000035476	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.935
ENSMAMP00000006080	cpsf1	ENSMAMP00000006080	ENSMAMP00000005790	Uncharacterized protein.	Cleavage and polyadenylation specific factor 1.	0.984
ENSMAMP00000006080	cpsf2	ENSMAMP00000006080	ENSMAMP00000006245	Uncharacterized protein.	Cleavage and polyadenylation specificity factor subunit 2.	0.984
ENSMAMP00000006080	cpsf4	ENSMAMP00000006080	ENSMAMP00000009273	Uncharacterized protein.	Cleavage and polyadenylation specific factor 4.	0.984
ENSMAMP00000006080	fip1l1	ENSMAMP00000006080	ENSMAMP00000006653	Uncharacterized protein.	FIP1 like 1b (S. cerevisiae).	0.983
ENSMAMP00000006080	ssu72	ENSMAMP00000006080	ENSMAMP00000035538	Uncharacterized protein.	SSU72 homolog, RNA polymerase II CTD phosphatase.	0.933
ENSMAMP00000006080	sympk	ENSMAMP00000006080	ENSMAMP00000015436	Uncharacterized protein.	Symplekin.	0.927
ENSMAMP00000028269	CPSF3	ENSMAMP00000028269	ENSMAMP00000013050	WD repeat domain 33.	Cleavage and polyadenylation specific factor 3.	0.977
ENSMAMP00000028269	ENSMAMP00000006080	ENSMAMP00000028269	ENSMAMP00000006080	WD repeat domain 33.	Uncharacterized protein.	0.946