(7 nodes) R-spondin, Fu-CRD domain, and ZNRF-3, ectodomain network (Mastacembelus armatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	lgr4	Leucine-rich repeat containing G protein-coupled receptor 4. (978 aa)
	rspo2	R-spondin 2. (246 aa)
	znrf3	Zinc and ring finger 3. (896 aa)
	LOC113142923	Ring finger protein 43. (815 aa)
	rspo1	R-spondin 1. (281 aa)
	LGR5	Leucine rich repeat containing G protein-coupled receptor 5. (818 aa)
	LOC113122475	R-spondin 3. (331 aa)

Your Current Organism:

Mastacembelus armatus

NCBI taxonomy Id: 205130
Other names: M. armatus, Macrognathus armatus, zig-zag eel

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LGR5	LOC113122475	ENSMAMP00000027463	ENSMAMP00000035830	Leucine rich repeat containing G protein-coupled receptor 5.	R-spondin 3.	0.971
LGR5	LOC113142923	ENSMAMP00000027463	ENSMAMP00000009265	Leucine rich repeat containing G protein-coupled receptor 5.	Ring finger protein 43.	0.945
LGR5	lgr4	ENSMAMP00000027463	ENSMAMP00000001987	Leucine rich repeat containing G protein-coupled receptor 5.	Leucine-rich repeat containing G protein-coupled receptor 4.	0.867
LGR5	rspo1	ENSMAMP00000027463	ENSMAMP00000011628	Leucine rich repeat containing G protein-coupled receptor 5.	R-spondin 1.	0.984
LGR5	rspo2	ENSMAMP00000027463	ENSMAMP00000002478	Leucine rich repeat containing G protein-coupled receptor 5.	R-spondin 2.	0.927
LGR5	znrf3	ENSMAMP00000027463	ENSMAMP00000006039	Leucine rich repeat containing G protein-coupled receptor 5.	Zinc and ring finger 3.	0.941
LOC113122475	LGR5	ENSMAMP00000035830	ENSMAMP00000027463	R-spondin 3.	Leucine rich repeat containing G protein-coupled receptor 5.	0.971
LOC113122475	LOC113142923	ENSMAMP00000035830	ENSMAMP00000009265	R-spondin 3.	Ring finger protein 43.	0.945
LOC113122475	lgr4	ENSMAMP00000035830	ENSMAMP00000001987	R-spondin 3.	Leucine-rich repeat containing G protein-coupled receptor 4.	0.971
LOC113122475	rspo1	ENSMAMP00000035830	ENSMAMP00000011628	R-spondin 3.	R-spondin 1.	0.846
LOC113122475	znrf3	ENSMAMP00000035830	ENSMAMP00000006039	R-spondin 3.	Zinc and ring finger 3.	0.994
LOC113142923	LGR5	ENSMAMP00000009265	ENSMAMP00000027463	Ring finger protein 43.	Leucine rich repeat containing G protein-coupled receptor 5.	0.945
LOC113142923	LOC113122475	ENSMAMP00000009265	ENSMAMP00000035830	Ring finger protein 43.	R-spondin 3.	0.945
LOC113142923	lgr4	ENSMAMP00000009265	ENSMAMP00000001987	Ring finger protein 43.	Leucine-rich repeat containing G protein-coupled receptor 4.	0.945
LOC113142923	rspo1	ENSMAMP00000009265	ENSMAMP00000011628	Ring finger protein 43.	R-spondin 1.	0.993
LOC113142923	rspo2	ENSMAMP00000009265	ENSMAMP00000002478	Ring finger protein 43.	R-spondin 2.	0.991
LOC113142923	znrf3	ENSMAMP00000009265	ENSMAMP00000006039	Ring finger protein 43.	Zinc and ring finger 3.	0.771
lgr4	LGR5	ENSMAMP00000001987	ENSMAMP00000027463	Leucine-rich repeat containing G protein-coupled receptor 4.	Leucine rich repeat containing G protein-coupled receptor 5.	0.867
lgr4	LOC113122475	ENSMAMP00000001987	ENSMAMP00000035830	Leucine-rich repeat containing G protein-coupled receptor 4.	R-spondin 3.	0.971
lgr4	LOC113142923	ENSMAMP00000001987	ENSMAMP00000009265	Leucine-rich repeat containing G protein-coupled receptor 4.	Ring finger protein 43.	0.945