(30 nodes) Semaphorin-plexin signaling pathway network (Mastacembelus armatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSMAMP00000001621	Plexin C1. (1514 aa)
	PLXNA2	Plexin A2. (1913 aa)
	ENSMAMP00000007032	Uncharacterized protein; Belongs to the semaphorin family. (840 aa)
	LOC113122494	Uncharacterized protein; Belongs to the semaphorin family. (626 aa)
	sema7a	Semaphorin 7A; Belongs to the semaphorin family. (651 aa)
	ENSMAMP00000010464	Uncharacterized protein. (4139 aa)
	ENSMAMP00000010815	Plexin b1a. (1976 aa)
	LOC113145505	Plexin A1a. (1895 aa)
	SEMA4F	Ssemaphorin 4F; Belongs to the semaphorin family. (853 aa)
	sema3e	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E; Belongs to the semaphorin family. (792 aa)
	LOC113134048	Semaphorin 4e; Belongs to the semaphorin family. (770 aa)
	plxna4	Plexin A4. (1915 aa)
	LOC113141837	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Aa; Belongs to the semaphorin family. (914 aa)
	ENSMAMP00000017217	Plexin B3. (1889 aa)
	NRP1	Neuropilin; Belongs to the neuropilin family. (958 aa)
	LOC113145324	Plexin A3. (1905 aa)
	LOC113136312	Si:ch211-113g11.6; Belongs to the semaphorin family. (639 aa)
	ENSMAMP00000018928	Uncharacterized protein; Belongs to the semaphorin family. (662 aa)
	PLXND1	Plexin D1. (1898 aa)
	nrp1	Neuropilin 1a. (968 aa)
	SEMA4D	Semaphorin 4D; Belongs to the semaphorin family. (860 aa)
	sema3b	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B; Belongs to the semaphorin family. (806 aa)
	sema3g	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3bl; Belongs to the semaphorin family. (785 aa)
	ENSMAMP00000025434	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Fa; Belongs to the semaphorin family. (706 aa)
	ENSMAMP00000026989	Plexin b2a. (1848 aa)
	LOC113129402	Si:ch211-129c21.1; Belongs to the semaphorin family. (807 aa)
	sema4c	Uncharacterized protein; Belongs to the semaphorin family. (868 aa)
	LOC113127144	Uncharacterized protein. (1035 aa)
	LOC113132168	Uncharacterized protein; Belongs to the semaphorin family. (911 aa)
	ENSMAMP00000035269	Plexin b1b. (2343 aa)

Your Current Organism:

Mastacembelus armatus

NCBI taxonomy Id: 205130
Other names: M. armatus, Macrognathus armatus, zig-zag eel

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSMAMP00000001621	ENSMAMP00000007032	ENSMAMP00000001621	ENSMAMP00000007032	Plexin C1.	Uncharacterized protein; Belongs to the semaphorin family.	0.612
ENSMAMP00000001621	ENSMAMP00000018928	ENSMAMP00000001621	ENSMAMP00000018928	Plexin C1.	Uncharacterized protein; Belongs to the semaphorin family.	0.746
ENSMAMP00000001621	ENSMAMP00000025434	ENSMAMP00000001621	ENSMAMP00000025434	Plexin C1.	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Fa; Belongs to the semaphorin family.	0.549
ENSMAMP00000001621	LOC113122494	ENSMAMP00000001621	ENSMAMP00000008116	Plexin C1.	Uncharacterized protein; Belongs to the semaphorin family.	0.786
ENSMAMP00000001621	LOC113127144	ENSMAMP00000001621	ENSMAMP00000031911	Plexin C1.	Uncharacterized protein.	0.415
ENSMAMP00000001621	LOC113129402	ENSMAMP00000001621	ENSMAMP00000027406	Plexin C1.	Si:ch211-129c21.1; Belongs to the semaphorin family.	0.746
ENSMAMP00000001621	LOC113132168	ENSMAMP00000001621	ENSMAMP00000032101	Plexin C1.	Uncharacterized protein; Belongs to the semaphorin family.	0.612
ENSMAMP00000001621	LOC113134048	ENSMAMP00000001621	ENSMAMP00000013709	Plexin C1.	Semaphorin 4e; Belongs to the semaphorin family.	0.746
ENSMAMP00000001621	LOC113136312	ENSMAMP00000001621	ENSMAMP00000018808	Plexin C1.	Si:ch211-113g11.6; Belongs to the semaphorin family.	0.706
ENSMAMP00000001621	LOC113141837	ENSMAMP00000001621	ENSMAMP00000016892	Plexin C1.	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Aa; Belongs to the semaphorin family.	0.685
ENSMAMP00000001621	NRP1	ENSMAMP00000001621	ENSMAMP00000017636	Plexin C1.	Neuropilin; Belongs to the neuropilin family.	0.583
ENSMAMP00000001621	SEMA4D	ENSMAMP00000001621	ENSMAMP00000021578	Plexin C1.	Semaphorin 4D; Belongs to the semaphorin family.	0.779
ENSMAMP00000001621	SEMA4F	ENSMAMP00000001621	ENSMAMP00000012054	Plexin C1.	Ssemaphorin 4F; Belongs to the semaphorin family.	0.612
ENSMAMP00000001621	nrp1	ENSMAMP00000001621	ENSMAMP00000021530	Plexin C1.	Neuropilin 1a.	0.877
ENSMAMP00000001621	sema3b	ENSMAMP00000001621	ENSMAMP00000024895	Plexin C1.	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B; Belongs to the semaphorin family.	0.685
ENSMAMP00000001621	sema3e	ENSMAMP00000001621	ENSMAMP00000012961	Plexin C1.	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E; Belongs to the semaphorin family.	0.760
ENSMAMP00000001621	sema3g	ENSMAMP00000001621	ENSMAMP00000024937	Plexin C1.	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3bl; Belongs to the semaphorin family.	0.695
ENSMAMP00000001621	sema4c	ENSMAMP00000001621	ENSMAMP00000030805	Plexin C1.	Uncharacterized protein; Belongs to the semaphorin family.	0.612
ENSMAMP00000001621	sema7a	ENSMAMP00000001621	ENSMAMP00000010401	Plexin C1.	Semaphorin 7A; Belongs to the semaphorin family.	0.786
ENSMAMP00000007032	ENSMAMP00000001621	ENSMAMP00000007032	ENSMAMP00000001621	Uncharacterized protein; Belongs to the semaphorin family.	Plexin C1.	0.612