48 items (Mastacembelus armatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	mras	Muscle RAS oncogene homolog. (208 aa)
	ENSMAMP00000000700	RAS-like, family 12. (249 aa)
	LOC113145316	RAP1A, member of RAS oncogene family a. (185 aa)
	RERG	RAS like estrogen regulated growth inhibitor. (235 aa)
	ENSMAMP00000001999	ZRAB1B, member RAS oncogene family a. (204 aa)
	LOC113140692	Zgc:55558. (223 aa)
	LOC113136618	Uncharacterized protein. (191 aa)
	ENSMAMP00000005485	Uncharacterized protein. (111 aa)
	kras	V-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog. (189 aa)
	ENSMAMP00000008933	Uncharacterized protein. (219 aa)
	LOC113133817	Uncharacterized protein. (218 aa)
	LOC113129836	Uncharacterized protein. (212 aa)
	LOC113133025	Si:dkeyp-59c12.1. (201 aa)
	ENSMAMP00000013267	Uncharacterized protein. (171 aa)
	RAB17	RAB17, member RAS oncogene family. (227 aa)
	rasl11a	RAS-like, family 11, member A. (255 aa)
	LOC113136714	RAB11a, member RAS oncogene family, like. (216 aa)
	rab4b	RAB4B, member RAS oncogene family. (250 aa)
	LOC113121375	V-ral simian leukemia viral oncogene homolog Aa (ras related). (279 aa)
	LOC113136452	RAB5A, member RAS oncogene family, b. (216 aa)
	ENSMAMP00000016706	Uncharacterized protein. (162 aa)
	LOC113123317	RAB5B, member RAS oncogene family. (216 aa)
	LOC113145075	Uncharacterized protein. (191 aa)
	RAB7A	RAB7A, member RAS oncogene family. (207 aa)
	CDC42	Cell division cycle 42. (191 aa)
	LOC113133567	RERG/RAS-like b. (205 aa)
	RAB27B	RAB27B, member RAS oncogene family. (218 aa)
	LOC113127156	Uncharacterized protein. (215 aa)
	rab5c	RAB5C, member RAS oncogene family. (220 aa)
	ENSMAMP00000031892	RAP2C, member of RAS oncogene family. (195 aa)
	rab27a	RAB27A, member RAS oncogene family. (219 aa)
	rab4a	RAB4a, member RAS oncogene family. (213 aa)
	LOC113130387	RAB7a, member RAS oncogene family. (207 aa)
	LOC113138495	Zgc:171927. (214 aa)
	rap1b	Uncharacterized protein. (244 aa)
	LOC113126880	Uncharacterized protein. (251 aa)
	LOC113129030	RAB11B, member RAS oncogene family, a. (218 aa)
	LOC113129003	Uncharacterized protein. (218 aa)
	LOC113140206	RAB1A, member RAS oncogene family a. (208 aa)
	LOC113136790	Zgc:171704. (214 aa)
	rab11a	RAB11a, member RAS oncogene family. (215 aa)
	LOC113135712	Uncharacterized protein. (220 aa)
	LOC113123341	V-ral simian leukemia viral oncogene homolog Ba (ras related). (222 aa)
	RAP2A	RAP2A, member of RAS oncogene family. (183 aa)
	LOC113126168	RAB5A, member RAS oncogene family, a. (216 aa)
	RAP2B	RAP2B, member of RAS oncogene family. (134 aa)
	ARF6	ADP ribosylation factor 6. (113 aa)
	rasl11b	RAS-like, family 11, member B. (248 aa)

Your Current Organism:

Mastacembelus armatus

NCBI taxonomy Id: 205130
Other names: M. armatus, Macrognathus armatus, zig-zag eel

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARF6	CDC42	ENSMAMP00000019733	ENSMAMP00000035008	ADP ribosylation factor 6.	Cell division cycle 42.	0.610
ARF6	ENSMAMP00000001999	ENSMAMP00000019733	ENSMAMP00000001999	ADP ribosylation factor 6.	ZRAB1B, member RAS oncogene family a.	0.460
ARF6	ENSMAMP00000013267	ENSMAMP00000019733	ENSMAMP00000013267	ADP ribosylation factor 6.	Uncharacterized protein.	0.460
ARF6	LOC113126880	ENSMAMP00000019733	ENSMAMP00000028139	ADP ribosylation factor 6.	Uncharacterized protein.	0.585
ARF6	LOC113130387	ENSMAMP00000019733	ENSMAMP00000030014	ADP ribosylation factor 6.	RAB7a, member RAS oncogene family.	0.412
ARF6	LOC113136618	ENSMAMP00000019733	ENSMAMP00000004060	ADP ribosylation factor 6.	Uncharacterized protein.	0.585
ARF6	LOC113138495	ENSMAMP00000019733	ENSMAMP00000029856	ADP ribosylation factor 6.	Zgc:171927.	0.454
ARF6	LOC113140206	ENSMAMP00000019733	ENSMAMP00000027232	ADP ribosylation factor 6.	RAB1A, member RAS oncogene family a.	0.460
ARF6	LOC113145075	ENSMAMP00000019733	ENSMAMP00000036083	ADP ribosylation factor 6.	Uncharacterized protein.	0.610
ARF6	RAB7A	ENSMAMP00000019733	ENSMAMP00000035653	ADP ribosylation factor 6.	RAB7A, member RAS oncogene family.	0.412
ARF6	rab4a	ENSMAMP00000019733	ENSMAMP00000030153	ADP ribosylation factor 6.	RAB4a, member RAS oncogene family.	0.534
ARF6	rab4b	ENSMAMP00000019733	ENSMAMP00000016260	ADP ribosylation factor 6.	RAB4B, member RAS oncogene family.	0.534
CDC42	ARF6	ENSMAMP00000035008	ENSMAMP00000019733	Cell division cycle 42.	ADP ribosylation factor 6.	0.610
CDC42	ENSMAMP00000000700	ENSMAMP00000035008	ENSMAMP00000000700	Cell division cycle 42.	RAS-like, family 12.	0.437
CDC42	ENSMAMP00000001999	ENSMAMP00000035008	ENSMAMP00000001999	Cell division cycle 42.	ZRAB1B, member RAS oncogene family a.	0.417
CDC42	ENSMAMP00000005485	ENSMAMP00000035008	ENSMAMP00000005485	Cell division cycle 42.	Uncharacterized protein.	0.610
CDC42	ENSMAMP00000013267	ENSMAMP00000035008	ENSMAMP00000013267	Cell division cycle 42.	Uncharacterized protein.	0.417
CDC42	ENSMAMP00000016706	ENSMAMP00000035008	ENSMAMP00000016706	Cell division cycle 42.	Uncharacterized protein.	0.488
CDC42	ENSMAMP00000031892	ENSMAMP00000035008	ENSMAMP00000031892	Cell division cycle 42.	RAP2C, member of RAS oncogene family.	0.488
CDC42	LOC113121375	ENSMAMP00000035008	ENSMAMP00000016412	Cell division cycle 42.	V-ral simian leukemia viral oncogene homolog Aa (ras related).	0.607