17 items (Mastacembelus armatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RAB27B	RAB27B, member RAS oncogene family. (218 aa)
	RAB39B	RAB39B, member RAS oncogene family. (213 aa)
	rab27a	RAB27A, member RAS oncogene family. (219 aa)
	LOC113129030	RAB11B, member RAS oncogene family, a. (218 aa)
	LOC113129003	Uncharacterized protein. (218 aa)
	ENSMAMP00000018506	RAB25, member RAS oncogene family a. (213 aa)
	LOC113140021	RAB3B, member RAS oncogene family. (217 aa)
	LOC113133817	Uncharacterized protein. (218 aa)
	rab11a	RAB11a, member RAS oncogene family. (215 aa)
	LOC113134029	RAB3A, member RAS oncogene family. (219 aa)
	rab3a	RAB3A, member RAS oncogene family, b. (219 aa)
	ENSMAMP00000008933	Uncharacterized protein. (219 aa)
	LOC113127984	Uncharacterized protein. (278 aa)
	rab3c	RAB3C, member RAS oncogene family. (225 aa)
	LOC113136714	RAB11a, member RAS oncogene family, like. (216 aa)
	LOC113136439	RAB25, member RAS oncogene family b. (213 aa)
	rab3d	RAB3D, member RAS oncogene family, b. (222 aa)

Your Current Organism:

Mastacembelus armatus

NCBI taxonomy Id: 205130
Other names: M. armatus, Macrognathus armatus, zig-zag eel

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSMAMP00000008933	ENSMAMP00000018506	ENSMAMP00000008933	ENSMAMP00000018506	Uncharacterized protein.	RAB25, member RAS oncogene family a.	0.518
ENSMAMP00000008933	LOC113127984	ENSMAMP00000008933	ENSMAMP00000003511	Uncharacterized protein.	Uncharacterized protein.	0.531
ENSMAMP00000008933	LOC113129003	ENSMAMP00000008933	ENSMAMP00000027558	Uncharacterized protein.	Uncharacterized protein.	0.559
ENSMAMP00000008933	LOC113129030	ENSMAMP00000008933	ENSMAMP00000027601	Uncharacterized protein.	RAB11B, member RAS oncogene family, a.	0.559
ENSMAMP00000008933	LOC113133817	ENSMAMP00000008933	ENSMAMP00000009434	Uncharacterized protein.	Uncharacterized protein.	0.558
ENSMAMP00000008933	LOC113134029	ENSMAMP00000008933	ENSMAMP00000009148	Uncharacterized protein.	RAB3A, member RAS oncogene family.	0.530
ENSMAMP00000008933	LOC113136439	ENSMAMP00000008933	ENSMAMP00000015175	Uncharacterized protein.	RAB25, member RAS oncogene family b.	0.516
ENSMAMP00000008933	LOC113136714	ENSMAMP00000008933	ENSMAMP00000015154	Uncharacterized protein.	RAB11a, member RAS oncogene family, like.	0.558
ENSMAMP00000008933	LOC113140021	ENSMAMP00000008933	ENSMAMP00000024010	Uncharacterized protein.	RAB3B, member RAS oncogene family.	0.533
ENSMAMP00000008933	RAB39B	ENSMAMP00000008933	ENSMAMP00000031677	Uncharacterized protein.	RAB39B, member RAS oncogene family.	0.434
ENSMAMP00000008933	rab11a	ENSMAMP00000008933	ENSMAMP00000025807	Uncharacterized protein.	RAB11a, member RAS oncogene family.	0.557
ENSMAMP00000008933	rab27a	ENSMAMP00000008933	ENSMAMP00000031125	Uncharacterized protein.	RAB27A, member RAS oncogene family.	0.507
ENSMAMP00000008933	rab3a	ENSMAMP00000008933	ENSMAMP00000009112	Uncharacterized protein.	RAB3A, member RAS oncogene family, b.	0.529
ENSMAMP00000008933	rab3c	ENSMAMP00000008933	ENSMAMP00000000648	Uncharacterized protein.	RAB3C, member RAS oncogene family.	0.530
ENSMAMP00000008933	rab3d	ENSMAMP00000008933	ENSMAMP00000016026	Uncharacterized protein.	RAB3D, member RAS oncogene family, b.	0.530
ENSMAMP00000018506	ENSMAMP00000008933	ENSMAMP00000018506	ENSMAMP00000008933	RAB25, member RAS oncogene family a.	Uncharacterized protein.	0.518
ENSMAMP00000018506	LOC113127984	ENSMAMP00000018506	ENSMAMP00000003511	RAB25, member RAS oncogene family a.	Uncharacterized protein.	0.542
ENSMAMP00000018506	LOC113134029	ENSMAMP00000018506	ENSMAMP00000009148	RAB25, member RAS oncogene family a.	RAB3A, member RAS oncogene family.	0.542
ENSMAMP00000018506	LOC113140021	ENSMAMP00000018506	ENSMAMP00000024010	RAB25, member RAS oncogene family a.	RAB3B, member RAS oncogene family.	0.542
ENSMAMP00000018506	RAB27B	ENSMAMP00000018506	ENSMAMP00000033992	RAB25, member RAS oncogene family a.	RAB27B, member RAS oncogene family.	0.522