34 items (Mastacembelus armatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	gata1	Uncharacterized protein. (261 aa)
	vps4a	Vacuolar protein sorting 4 homolog A; Belongs to the AAA ATPase family. (436 aa)
	VPS4B	Vacuolar protein sorting 4 homolog B; Belongs to the AAA ATPase family. (510 aa)
	atp13a2	Cation-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type V subfamily. (1144 aa)
	LOC113132963	Synaptotagmin IXb. (527 aa)
	LOC113129057	Uncharacterized protein; Belongs to the AAA ATPase family. (456 aa)
	cdk5	Cyclin-dependent kinase 5; Belongs to the protein kinase superfamily. (292 aa)
	LOC113145473	Hyaluronidase. (457 aa)
	cadps	Ca2+-dependent activator protein for secretion b. (1254 aa)
	ENSMAMP00000027345	Si:ch211-259g3.4. (2057 aa)
	ENSMAMP00000029110	PX domain-containing protein. (444 aa)
	LOC113139354	Vesicle-associated membrane protein 8 (endobrevin). (122 aa)
	ENSMAMP00000030426	Synaptotagmin IXa. (488 aa)
	hgs	Hepatocyte growth factor-regulated tyrosine kinase substrate. (770 aa)
	rab27a	RAB27A, member RAS oncogene family. (219 aa)
	LOC113130813	GATA binding protein 1a. (421 aa)
	ENSMAMP00000032603	Synaptotagmin VIIb. (487 aa)
	CADPS2	Calcium dependent secretion activator 2. (1244 aa)
	RAB27B	RAB27B, member RAS oncogene family. (218 aa)
	SNX4	Sorting nexin 4. (437 aa)
	LOC113130189	Uncharacterized protein. (1250 aa)
	stam	Signal transducing adaptor molecule (SH3 domain and ITAM motif) 1. (521 aa)
	LOC113133369	Secretory carrier-associated membrane protein. (233 aa)
	ENSMAMP00000003350	Secretory carrier-associated membrane protein. (228 aa)
	lamp1	Lysosomal associated membrane protein 1a. (416 aa)
	tsg101	Tumor susceptibility 101a. (390 aa)
	ENSMAMP00000006377	Zgc:123278. (119 aa)
	ENSMAMP00000007572	Synaptotagmin VIIa. (480 aa)
	pla2g6	Phospholipase A2, group VI (cytosolic, calcium-independent). (820 aa)
	ENSMAMP00000008933	Uncharacterized protein. (219 aa)
	ENSMAMP00000011715	ZP domain-containing protein. (410 aa)
	ENSMAMP00000013308	Fibrinogen beta chain. (491 aa)
	pdcd6ip	Programmed cell death 6 interacting protein. (879 aa)
	gab2	GRB2-associated binding protein 2. (678 aa)

Your Current Organism:

Mastacembelus armatus

NCBI taxonomy Id: 205130
Other names: M. armatus, Macrognathus armatus, zig-zag eel

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSMAMP00000006377	LOC113129057	ENSMAMP00000006377	ENSMAMP00000023635	Zgc:123278.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.585
ENSMAMP00000006377	VPS4B	ENSMAMP00000006377	ENSMAMP00000019696	Zgc:123278.	Vacuolar protein sorting 4 homolog B; Belongs to the AAA ATPase family.	0.585
ENSMAMP00000006377	hgs	ENSMAMP00000006377	ENSMAMP00000030708	Zgc:123278.	Hepatocyte growth factor-regulated tyrosine kinase substrate.	0.982
ENSMAMP00000006377	pdcd6ip	ENSMAMP00000006377	ENSMAMP00000017406	Zgc:123278.	Programmed cell death 6 interacting protein.	0.924
ENSMAMP00000006377	stam	ENSMAMP00000006377	ENSMAMP00000001334	Zgc:123278.	Signal transducing adaptor molecule (SH3 domain and ITAM motif) 1.	0.926
ENSMAMP00000006377	vps4a	ENSMAMP00000006377	ENSMAMP00000019185	Zgc:123278.	Vacuolar protein sorting 4 homolog A; Belongs to the AAA ATPase family.	0.585
ENSMAMP00000007572	LOC113139354	ENSMAMP00000007572	ENSMAMP00000029799	Synaptotagmin VIIa.	Vesicle-associated membrane protein 8 (endobrevin).	0.532
ENSMAMP00000008933	lamp1	ENSMAMP00000008933	ENSMAMP00000005382	Uncharacterized protein.	Lysosomal associated membrane protein 1a.	0.486
ENSMAMP00000008933	rab27a	ENSMAMP00000008933	ENSMAMP00000031125	Uncharacterized protein.	RAB27A, member RAS oncogene family.	0.507
ENSMAMP00000011715	LOC113145473	ENSMAMP00000011715	ENSMAMP00000024341	ZP domain-containing protein.	Hyaluronidase.	0.475
ENSMAMP00000029110	LOC113139354	ENSMAMP00000029110	ENSMAMP00000029799	PX domain-containing protein.	Vesicle-associated membrane protein 8 (endobrevin).	0.521
ENSMAMP00000030426	LOC113139354	ENSMAMP00000030426	ENSMAMP00000029799	Synaptotagmin IXa.	Vesicle-associated membrane protein 8 (endobrevin).	0.630
ENSMAMP00000032603	LOC113139354	ENSMAMP00000032603	ENSMAMP00000029799	Synaptotagmin VIIb.	Vesicle-associated membrane protein 8 (endobrevin).	0.532
LOC113129057	ENSMAMP00000006377	ENSMAMP00000023635	ENSMAMP00000006377	Uncharacterized protein; Belongs to the AAA ATPase family.	Zgc:123278.	0.585
LOC113129057	hgs	ENSMAMP00000023635	ENSMAMP00000030708	Uncharacterized protein; Belongs to the AAA ATPase family.	Hepatocyte growth factor-regulated tyrosine kinase substrate.	0.588
LOC113129057	pdcd6ip	ENSMAMP00000023635	ENSMAMP00000017406	Uncharacterized protein; Belongs to the AAA ATPase family.	Programmed cell death 6 interacting protein.	0.870
LOC113129057	tsg101	ENSMAMP00000023635	ENSMAMP00000006342	Uncharacterized protein; Belongs to the AAA ATPase family.	Tumor susceptibility 101a.	0.585
LOC113129057	vps4a	ENSMAMP00000023635	ENSMAMP00000019185	Uncharacterized protein; Belongs to the AAA ATPase family.	Vacuolar protein sorting 4 homolog A; Belongs to the AAA ATPase family.	0.829
LOC113132963	LOC113139354	ENSMAMP00000021827	ENSMAMP00000029799	Synaptotagmin IXb.	Vesicle-associated membrane protein 8 (endobrevin).	0.630
LOC113139354	ENSMAMP00000007572	ENSMAMP00000029799	ENSMAMP00000007572	Vesicle-associated membrane protein 8 (endobrevin).	Synaptotagmin VIIa.	0.532