15 items (Mastacembelus armatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ERC2	Uncharacterized protein. (879 aa)
	RIMS2	Regulating synaptic membrane exocytosis 2. (1292 aa)
	RIMS1	Regulating synaptic membrane exocytosis 1. (1426 aa)
	LOC113141940	ELKS/RAB6-interacting/CAST family member 1. (1152 aa)
	erc1	ELKS/RAB6-interacting/CAST family member 1a. (1110 aa)
	ENSMAMP00000011233	Regulating synaptic membrane exocytosis 3. (326 aa)
	ENSMAMP00000035403	ELKS/RAB6-interacting/CAST family member 2. (935 aa)
	ENSMAMP00000035400	Bassoon (presynaptic cytomatrix protein) b. (3625 aa)
	ENSMAMP00000033045	Uncharacterized protein. (1507 aa)
	BSN	Bassoon presynaptic cytomatrix protein. (3395 aa)
	ENSMAMP00000015024	C2 domain-containing protein. (322 aa)
	ENSMAMP00000015094	Regulating synaptic membrane exocytosis 1a. (917 aa)
	ENSMAMP00000017194	Piccolo presynaptic cytomatrix protein a. (3811 aa)
	PCLO	Piccolo presynaptic cytomatrix protein. (2396 aa)
	ENSMAMP00000012953	Uncharacterized protein. (611 aa)

Your Current Organism:

Mastacembelus armatus

NCBI taxonomy Id: 205130
Other names: M. armatus, Macrognathus armatus, zig-zag eel

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BSN	ENSMAMP00000012953	ENSMAMP00000022744	ENSMAMP00000012953	Bassoon presynaptic cytomatrix protein.	Uncharacterized protein.	0.571
BSN	ENSMAMP00000017194	ENSMAMP00000022744	ENSMAMP00000017194	Bassoon presynaptic cytomatrix protein.	Piccolo presynaptic cytomatrix protein a.	0.571
BSN	PCLO	ENSMAMP00000022744	ENSMAMP00000012916	Bassoon presynaptic cytomatrix protein.	Piccolo presynaptic cytomatrix protein.	0.571
ENSMAMP00000011233	ENSMAMP00000012953	ENSMAMP00000011233	ENSMAMP00000012953	Regulating synaptic membrane exocytosis 3.	Uncharacterized protein.	0.581
ENSMAMP00000011233	ENSMAMP00000015094	ENSMAMP00000011233	ENSMAMP00000015094	Regulating synaptic membrane exocytosis 3.	Regulating synaptic membrane exocytosis 1a.	0.716
ENSMAMP00000011233	ENSMAMP00000017194	ENSMAMP00000011233	ENSMAMP00000017194	Regulating synaptic membrane exocytosis 3.	Piccolo presynaptic cytomatrix protein a.	0.581
ENSMAMP00000011233	ENSMAMP00000033045	ENSMAMP00000011233	ENSMAMP00000033045	Regulating synaptic membrane exocytosis 3.	Uncharacterized protein.	0.546
ENSMAMP00000011233	ENSMAMP00000035403	ENSMAMP00000011233	ENSMAMP00000035403	Regulating synaptic membrane exocytosis 3.	ELKS/RAB6-interacting/CAST family member 2.	0.518
ENSMAMP00000011233	ERC2	ENSMAMP00000011233	ENSMAMP00000013934	Regulating synaptic membrane exocytosis 3.	Uncharacterized protein.	0.518
ENSMAMP00000011233	LOC113141940	ENSMAMP00000011233	ENSMAMP00000015012	Regulating synaptic membrane exocytosis 3.	ELKS/RAB6-interacting/CAST family member 1.	0.518
ENSMAMP00000011233	PCLO	ENSMAMP00000011233	ENSMAMP00000012916	Regulating synaptic membrane exocytosis 3.	Piccolo presynaptic cytomatrix protein.	0.581
ENSMAMP00000011233	RIMS2	ENSMAMP00000011233	ENSMAMP00000004886	Regulating synaptic membrane exocytosis 3.	Regulating synaptic membrane exocytosis 2.	0.571
ENSMAMP00000011233	erc1	ENSMAMP00000011233	ENSMAMP00000010399	Regulating synaptic membrane exocytosis 3.	ELKS/RAB6-interacting/CAST family member 1a.	0.518
ENSMAMP00000012953	BSN	ENSMAMP00000012953	ENSMAMP00000022744	Uncharacterized protein.	Bassoon presynaptic cytomatrix protein.	0.571
ENSMAMP00000012953	ENSMAMP00000011233	ENSMAMP00000012953	ENSMAMP00000011233	Uncharacterized protein.	Regulating synaptic membrane exocytosis 3.	0.581
ENSMAMP00000012953	ENSMAMP00000015024	ENSMAMP00000012953	ENSMAMP00000015024	Uncharacterized protein.	C2 domain-containing protein.	0.581
ENSMAMP00000012953	ENSMAMP00000015094	ENSMAMP00000012953	ENSMAMP00000015094	Uncharacterized protein.	Regulating synaptic membrane exocytosis 1a.	0.581
ENSMAMP00000012953	ENSMAMP00000033045	ENSMAMP00000012953	ENSMAMP00000033045	Uncharacterized protein.	Uncharacterized protein.	0.654
ENSMAMP00000012953	ENSMAMP00000035400	ENSMAMP00000012953	ENSMAMP00000035400	Uncharacterized protein.	Bassoon (presynaptic cytomatrix protein) b.	0.571
ENSMAMP00000012953	RIMS1	ENSMAMP00000012953	ENSMAMP00000007149	Uncharacterized protein.	Regulating synaptic membrane exocytosis 1.	0.581