(19 nodes) Brain morphogenesis network (Mastacembelus armatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	bbs1	Bardet-Biedl syndrome 1. (581 aa)
	ZNF335	Zinc finger protein 335. (1585 aa)
	crppa	CDP-L-ribitol pyrophosphorylase A. (445 aa)
	slc6a4	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family. (674 aa)
	ctnna1	Catenin (cadherin-associated protein), alpha 1. (907 aa)
	uchl5	Ubiquitin carboxyl-terminal hydrolase. (329 aa)
	bbs4	Bardet-Biedl syndrome 4. (538 aa)
	gsx2	GS homeobox 2. (238 aa)
	LOC113138563	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family. (587 aa)
	mkks	McKusick-Kaufman syndrome. (568 aa)
	ctnna2	Catenin (cadherin-associated protein), alpha 2. (905 aa)
	lamc1	Laminin, gamma 1. (1596 aa)
	ENSMAMP00000027723	Laminin, gamma 3. (1570 aa)
	LOC113135526	Cytochrome P450, family 26, subfamily A, polypeptide 1; Belongs to the cytochrome P450 family. (488 aa)
	fancc	FA complementation group C. (606 aa)
	ENSMAMP00000034096	Forkhead box H1. (476 aa)
	ENSMAMP00000035623	FA complementation group D2. (1417 aa)
	ENSMAMP00000001543	Neurofibromin 1b. (2745 aa)
	smo	Smoothened, frizzled class receptor; Belongs to the G-protein coupled receptor Fz/Smo family. (826 aa)

Your Current Organism:

Mastacembelus armatus

NCBI taxonomy Id: 205130
Other names: M. armatus, Macrognathus armatus, zig-zag eel

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSMAMP00000001543	bbs4	ENSMAMP00000001543	ENSMAMP00000020490	Neurofibromin 1b.	Bardet-Biedl syndrome 4.	0.462
ENSMAMP00000034096	uchl5	ENSMAMP00000034096	ENSMAMP00000019555	Forkhead box H1.	Ubiquitin carboxyl-terminal hydrolase.	0.407
ENSMAMP00000035623	fancc	ENSMAMP00000035623	ENSMAMP00000031127	FA complementation group D2.	FA complementation group C.	0.993
bbs1	bbs4	ENSMAMP00000015626	ENSMAMP00000020490	Bardet-Biedl syndrome 1.	Bardet-Biedl syndrome 4.	0.995
bbs1	crppa	ENSMAMP00000015626	ENSMAMP00000017416	Bardet-Biedl syndrome 1.	CDP-L-ribitol pyrophosphorylase A.	0.419
bbs1	mkks	ENSMAMP00000015626	ENSMAMP00000026260	Bardet-Biedl syndrome 1.	McKusick-Kaufman syndrome.	0.474
bbs1	smo	ENSMAMP00000015626	ENSMAMP00000015610	Bardet-Biedl syndrome 1.	Smoothened, frizzled class receptor; Belongs to the G-protein coupled receptor Fz/Smo family.	0.816
bbs4	ENSMAMP00000001543	ENSMAMP00000020490	ENSMAMP00000001543	Bardet-Biedl syndrome 4.	Neurofibromin 1b.	0.462
bbs4	bbs1	ENSMAMP00000020490	ENSMAMP00000015626	Bardet-Biedl syndrome 4.	Bardet-Biedl syndrome 1.	0.995
bbs4	smo	ENSMAMP00000020490	ENSMAMP00000015610	Bardet-Biedl syndrome 4.	Smoothened, frizzled class receptor; Belongs to the G-protein coupled receptor Fz/Smo family.	0.703
crppa	bbs1	ENSMAMP00000017416	ENSMAMP00000015626	CDP-L-ribitol pyrophosphorylase A.	Bardet-Biedl syndrome 1.	0.419
fancc	ENSMAMP00000035623	ENSMAMP00000031127	ENSMAMP00000035623	FA complementation group C.	FA complementation group D2.	0.993
mkks	bbs1	ENSMAMP00000026260	ENSMAMP00000015626	McKusick-Kaufman syndrome.	Bardet-Biedl syndrome 1.	0.474
smo	bbs1	ENSMAMP00000015610	ENSMAMP00000015626	Smoothened, frizzled class receptor; Belongs to the G-protein coupled receptor Fz/Smo family.	Bardet-Biedl syndrome 1.	0.816
smo	bbs4	ENSMAMP00000015610	ENSMAMP00000020490	Smoothened, frizzled class receptor; Belongs to the G-protein coupled receptor Fz/Smo family.	Bardet-Biedl syndrome 4.	0.703
uchl5	ENSMAMP00000034096	ENSMAMP00000019555	ENSMAMP00000034096	Ubiquitin carboxyl-terminal hydrolase.	Forkhead box H1.	0.407