(20 nodes) Camera-type eye photoreceptor cell differentiation network (Mastacembelus armatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rpgrip1l	RPGRIP1 like. (1286 aa)
	bbs4	Bardet-Biedl syndrome 4. (538 aa)
	bhlhe23	Basic helix-loop-helix family, member e23. (222 aa)
	gdf5	Growth differentiation factor 5. (602 aa)
	ENSMAMP00000014313	T-box transcription factor 2a. (651 aa)
	ENSMAMP00000014076	Uncharacterized protein. (2521 aa)
	ENSMAMP00000032457	Uncharacterized protein. (381 aa)
	ENSMAMP00000032443	Uncharacterized protein. (259 aa)
	med24	Mediator complex subunit 24. (986 aa)
	LOC113134680	Calcium binding protein 4. (303 aa)
	ENSMAMP00000011212	RAR-related orphan receptor B. (472 aa)
	ttc8	Tetratricopeptide repeat domain 8. (513 aa)
	LOC113129265	Retinal homeobox gene 1. (344 aa)
	TBX2	T-box transcription factor 2. (684 aa)
	ENSMAMP00000004338	Usher syndrome 1C. (510 aa)
	LOC113122492	Growth differentiation factor 6a. (448 aa)
	ENSMAMP00000002642	Thyroid hormone receptor beta. (463 aa)
	med27	Mediator complex subunit 27. (311 aa)
	LOC113135789	N-acetylglucosaminidase, alpha. (757 aa)
	ENSMAMP00000026586	Uncharacterized protein. (2215 aa)

Your Current Organism:

Mastacembelus armatus

NCBI taxonomy Id: 205130
Other names: M. armatus, Macrognathus armatus, zig-zag eel

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSMAMP00000002642	med24	ENSMAMP00000002642	ENSMAMP00000012394	Thyroid hormone receptor beta.	Mediator complex subunit 24.	0.859
ENSMAMP00000002642	med27	ENSMAMP00000002642	ENSMAMP00000031805	Thyroid hormone receptor beta.	Mediator complex subunit 27.	0.818
ENSMAMP00000004338	bbs4	ENSMAMP00000004338	ENSMAMP00000020490	Usher syndrome 1C.	Bardet-Biedl syndrome 4.	0.405
ENSMAMP00000004338	ttc8	ENSMAMP00000004338	ENSMAMP00000008256	Usher syndrome 1C.	Tetratricopeptide repeat domain 8.	0.481
ENSMAMP00000014076	bbs4	ENSMAMP00000014076	ENSMAMP00000020490	Uncharacterized protein.	Bardet-Biedl syndrome 4.	0.462
ENSMAMP00000014076	ttc8	ENSMAMP00000014076	ENSMAMP00000008256	Uncharacterized protein.	Tetratricopeptide repeat domain 8.	0.499
ENSMAMP00000026586	bbs4	ENSMAMP00000026586	ENSMAMP00000020490	Uncharacterized protein.	Bardet-Biedl syndrome 4.	0.462
ENSMAMP00000026586	ttc8	ENSMAMP00000026586	ENSMAMP00000008256	Uncharacterized protein.	Tetratricopeptide repeat domain 8.	0.499
bbs4	ENSMAMP00000004338	ENSMAMP00000020490	ENSMAMP00000004338	Bardet-Biedl syndrome 4.	Usher syndrome 1C.	0.405
bbs4	ENSMAMP00000014076	ENSMAMP00000020490	ENSMAMP00000014076	Bardet-Biedl syndrome 4.	Uncharacterized protein.	0.462
bbs4	ENSMAMP00000026586	ENSMAMP00000020490	ENSMAMP00000026586	Bardet-Biedl syndrome 4.	Uncharacterized protein.	0.462
bbs4	rpgrip1l	ENSMAMP00000020490	ENSMAMP00000023410	Bardet-Biedl syndrome 4.	RPGRIP1 like.	0.454
bbs4	ttc8	ENSMAMP00000020490	ENSMAMP00000008256	Bardet-Biedl syndrome 4.	Tetratricopeptide repeat domain 8.	0.994
med24	ENSMAMP00000002642	ENSMAMP00000012394	ENSMAMP00000002642	Mediator complex subunit 24.	Thyroid hormone receptor beta.	0.859
med24	med27	ENSMAMP00000012394	ENSMAMP00000031805	Mediator complex subunit 24.	Mediator complex subunit 27.	0.995
med27	ENSMAMP00000002642	ENSMAMP00000031805	ENSMAMP00000002642	Mediator complex subunit 27.	Thyroid hormone receptor beta.	0.818
med27	med24	ENSMAMP00000031805	ENSMAMP00000012394	Mediator complex subunit 27.	Mediator complex subunit 24.	0.995
rpgrip1l	bbs4	ENSMAMP00000023410	ENSMAMP00000020490	RPGRIP1 like.	Bardet-Biedl syndrome 4.	0.454
ttc8	ENSMAMP00000004338	ENSMAMP00000008256	ENSMAMP00000004338	Tetratricopeptide repeat domain 8.	Usher syndrome 1C.	0.481
ttc8	ENSMAMP00000014076	ENSMAMP00000008256	ENSMAMP00000014076	Tetratricopeptide repeat domain 8.	Uncharacterized protein.	0.499