(34 nodes) Regulation of dendritic spine development network (Mastacembelus armatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	caprin1	Cell cycle associated protein 1b. (706 aa)
	ENSMAMP00000001099	Fragile X mental retardation 1. (613 aa)
	eef2k	Eukaryotic elongation factor 2 kinase. (797 aa)
	ENSMAMP00000005485	Uncharacterized protein. (111 aa)
	UBE3A	Ubiquitin-protein ligase E3A; E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and transfers it to its substrates. (896 aa)
	TANC2	Tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2. (2171 aa)
	cunh21orf91	Zgc:110006. (277 aa)
	LOC113126988	Apolipoprotein Ea. (261 aa)
	GRIN3A	Glutamate ionotropic receptor NMDA type subunit 3A; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family. (1150 aa)
	LOC113136388	Apolipoprotein Eb. (276 aa)
	ENSMAMP00000012044	SH3 and multiple ankyrin repeat domains 3a. (1613 aa)
	dbnl	Drebrin-like b. (477 aa)
	ENSMAMP00000013564	Uncharacterized protein. (1675 aa)
	baiap2	BAI1 associated protein 2. (553 aa)
	ENSMAMP00000015442	Ubiquitin protein ligase E3A. (834 aa)
	mapk6	Mitogen-activated protein kinase 6. (757 aa)
	LOC113139179	Si:dkey-40c11.2. (778 aa)
	LOC113124594	Drebrin-like a. (495 aa)
	dhx36	DEAH (Asp-Glu-Ala-His) box polypeptide 36. (1057 aa)
	ARF6	ADP ribosylation factor 6. (113 aa)
	llph	LLP homolog, long-term synaptic facilitation factor. (125 aa)
	efna1	Ephrin-A1b; Belongs to the ephrin family. (234 aa)
	LOC113125888	Ephrin-A1a; Belongs to the ephrin family. (235 aa)
	disc1	DISC1 scaffold protein. (852 aa)
	ENSMAMP00000027874	Uncharacterized protein. (1727 aa)
	mapkapk5	MAPK activated protein kinase 5. (480 aa)
	cux2	Homeobox protein cut-like. (1473 aa)
	LOC113140676	BAI1-associated protein 2a. (559 aa)
	dlg5	Discs, large homolog 5a (Drosophila); Belongs to the MAGUK family. (2030 aa)
	dbn1	Drebrin 1. (565 aa)
	caprin2	Caprin family member 2. (920 aa)
	RELN	Reelin. (3453 aa)
	LOC113137917	Cell cycle associated protein 1a. (636 aa)
	ENSMAMP00000032315	SH3 and multiple ankyrin repeat domains 1. (830 aa)

Your Current Organism:

Mastacembelus armatus

NCBI taxonomy Id: 205130
Other names: M. armatus, Macrognathus armatus, zig-zag eel

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARF6	ENSMAMP00000012044	ENSMAMP00000019733	ENSMAMP00000012044	ADP ribosylation factor 6.	SH3 and multiple ankyrin repeat domains 3a.	0.808
ARF6	ENSMAMP00000013564	ENSMAMP00000019733	ENSMAMP00000013564	ADP ribosylation factor 6.	Uncharacterized protein.	0.808
ARF6	ENSMAMP00000027874	ENSMAMP00000019733	ENSMAMP00000027874	ADP ribosylation factor 6.	Uncharacterized protein.	0.808
ARF6	ENSMAMP00000032315	ENSMAMP00000019733	ENSMAMP00000032315	ADP ribosylation factor 6.	SH3 and multiple ankyrin repeat domains 1.	0.808
ARF6	LOC113140676	ENSMAMP00000019733	ENSMAMP00000031372	ADP ribosylation factor 6.	BAI1-associated protein 2a.	0.442
ARF6	baiap2	ENSMAMP00000019733	ENSMAMP00000013566	ADP ribosylation factor 6.	BAI1 associated protein 2.	0.442
ARF6	mapk6	ENSMAMP00000019733	ENSMAMP00000016476	ADP ribosylation factor 6.	Mitogen-activated protein kinase 6.	0.401
ENSMAMP00000001099	LOC113137917	ENSMAMP00000001099	ENSMAMP00000032573	Fragile X mental retardation 1.	Cell cycle associated protein 1a.	0.658
ENSMAMP00000001099	UBE3A	ENSMAMP00000001099	ENSMAMP00000005551	Fragile X mental retardation 1.	Ubiquitin-protein ligase E3A; E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and transfers it to its substrates.	0.519
ENSMAMP00000001099	caprin1	ENSMAMP00000001099	ENSMAMP00000000447	Fragile X mental retardation 1.	Cell cycle associated protein 1b.	0.658
ENSMAMP00000001099	dhx36	ENSMAMP00000001099	ENSMAMP00000019595	Fragile X mental retardation 1.	DEAH (Asp-Glu-Ala-His) box polypeptide 36.	0.415
ENSMAMP00000005485	ENSMAMP00000012044	ENSMAMP00000005485	ENSMAMP00000012044	Uncharacterized protein.	SH3 and multiple ankyrin repeat domains 3a.	0.808
ENSMAMP00000005485	ENSMAMP00000013564	ENSMAMP00000005485	ENSMAMP00000013564	Uncharacterized protein.	Uncharacterized protein.	0.808
ENSMAMP00000005485	ENSMAMP00000027874	ENSMAMP00000005485	ENSMAMP00000027874	Uncharacterized protein.	Uncharacterized protein.	0.808
ENSMAMP00000005485	ENSMAMP00000032315	ENSMAMP00000005485	ENSMAMP00000032315	Uncharacterized protein.	SH3 and multiple ankyrin repeat domains 1.	0.808
ENSMAMP00000005485	LOC113140676	ENSMAMP00000005485	ENSMAMP00000031372	Uncharacterized protein.	BAI1-associated protein 2a.	0.442
ENSMAMP00000005485	baiap2	ENSMAMP00000005485	ENSMAMP00000013566	Uncharacterized protein.	BAI1 associated protein 2.	0.442
ENSMAMP00000005485	mapk6	ENSMAMP00000005485	ENSMAMP00000016476	Uncharacterized protein.	Mitogen-activated protein kinase 6.	0.401
ENSMAMP00000012044	ARF6	ENSMAMP00000012044	ENSMAMP00000019733	SH3 and multiple ankyrin repeat domains 3a.	ADP ribosylation factor 6.	0.808
ENSMAMP00000012044	ENSMAMP00000005485	ENSMAMP00000012044	ENSMAMP00000005485	SH3 and multiple ankyrin repeat domains 3a.	Uncharacterized protein.	0.808