39 items (Mastacembelus armatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC113128546	Zgc:136908; Belongs to the AAA ATPase family. (808 aa)
	ENSMAMP00000020276	Valosin containing protein; Belongs to the AAA ATPase family. (761 aa)
	mvb12a	Uncharacterized protein. (288 aa)
	LOC113126795	Lysosomal protein transmembrane 4 beta. (225 aa)
	stam	Signal transducing adaptor molecule (SH3 domain and ITAM motif) 1. (521 aa)
	chmp3	Charged multivesicular body protein 3. (221 aa)
	vta1	Vesicle (multivesicular body) trafficking 1. (324 aa)
	LAPTM4B	Lysosomal protein transmembrane 4 beta. (227 aa)
	vps25	Vacuolar protein sorting 25 homolog. (174 aa)
	chmp7	Charged multivesicular body protein 7. (454 aa)
	LOC113121675	Charged multivesicular body protein 4C. (232 aa)
	LOC113121737	Charged multivesicular body protein 5b. (220 aa)
	ENSMAMP00000008933	Uncharacterized protein. (219 aa)
	LOC113144398	Uncharacterized protein. (235 aa)
	LOC113144175	Leptin receptor overlapping transcript like 1. (131 aa)
	ENSMAMP00000025414	Lysosomal trafficking regulator. (3756 aa)
	LOC113145512	Charged multivesicular body protein 4Bb. (222 aa)
	LOC113134225	Charged multivesicular body protein 5a. (220 aa)
	chmp2b	Charged multivesicular body protein 2Bb. (214 aa)
	ubxn6	UBX domain protein 6. (450 aa)
	vps36	Vacuolar protein sorting 36 homolog. (382 aa)
	rab27a	RAB27A, member RAS oncogene family. (219 aa)
	LOC113141156	Charged multivesicular body protein 6a. (227 aa)
	RAB27B	RAB27B, member RAS oncogene family. (218 aa)
	dennd10	DENN domain containing 10. (351 aa)
	LEPROT	Leptin receptor overlapping transcript. (135 aa)
	snf8	SNF8 subunit of ESCRT-II. (292 aa)
	chmp2a	Charged multivesicular body protein 2A. (219 aa)
	TMEM50B	Transmembrane protein 50B. (158 aa)
	ENSMAMP00000012467	Sortilin. (848 aa)
	LOC113124538	Rab interacting lysosomal protein. (426 aa)
	ENSMAMP00000013653	Charged multivesicular body protein 6. (222 aa)
	tmem50a	Transmembrane protein 50A. (185 aa)
	pdcd6ip	Programmed cell death 6 interacting protein. (879 aa)
	ENSMAMP00000017741	Sortilin. (349 aa)
	chmp1b	Chromatin modifying protein 1B. (200 aa)
	ptpn23	Protein tyrosine phosphatase, non-receptor type 23, a. (1931 aa)
	LOC113129789	Uncharacterized protein. (222 aa)
	chmp1a	Charged multivesicular body protein 1A. (198 aa)

Your Current Organism:

Mastacembelus armatus

NCBI taxonomy Id: 205130
Other names: M. armatus, Macrognathus armatus, zig-zag eel

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSMAMP00000008933	rab27a	ENSMAMP00000008933	ENSMAMP00000031125	Uncharacterized protein.	RAB27A, member RAS oncogene family.	0.507
ENSMAMP00000012467	ENSMAMP00000017741	ENSMAMP00000012467	ENSMAMP00000017741	Sortilin.	Sortilin.	0.845
ENSMAMP00000013653	ENSMAMP00000020276	ENSMAMP00000013653	ENSMAMP00000020276	Charged multivesicular body protein 6.	Valosin containing protein; Belongs to the AAA ATPase family.	0.400
ENSMAMP00000013653	LOC113121675	ENSMAMP00000013653	ENSMAMP00000007052	Charged multivesicular body protein 6.	Charged multivesicular body protein 4C.	0.962
ENSMAMP00000013653	LOC113121737	ENSMAMP00000013653	ENSMAMP00000008433	Charged multivesicular body protein 6.	Charged multivesicular body protein 5b.	0.886
ENSMAMP00000013653	LOC113128546	ENSMAMP00000013653	ENSMAMP00000019392	Charged multivesicular body protein 6.	Zgc:136908; Belongs to the AAA ATPase family.	0.400
ENSMAMP00000013653	LOC113129789	ENSMAMP00000013653	ENSMAMP00000018700	Charged multivesicular body protein 6.	Uncharacterized protein.	0.936
ENSMAMP00000013653	LOC113134225	ENSMAMP00000013653	ENSMAMP00000026715	Charged multivesicular body protein 6.	Charged multivesicular body protein 5a.	0.886
ENSMAMP00000013653	LOC113141156	ENSMAMP00000013653	ENSMAMP00000031352	Charged multivesicular body protein 6.	Charged multivesicular body protein 6a.	0.844
ENSMAMP00000013653	LOC113144398	ENSMAMP00000013653	ENSMAMP00000021829	Charged multivesicular body protein 6.	Uncharacterized protein.	0.844
ENSMAMP00000013653	LOC113145512	ENSMAMP00000013653	ENSMAMP00000025605	Charged multivesicular body protein 6.	Charged multivesicular body protein 4Bb.	0.936
ENSMAMP00000013653	chmp1a	ENSMAMP00000013653	ENSMAMP00000019092	Charged multivesicular body protein 6.	Charged multivesicular body protein 1A.	0.913
ENSMAMP00000013653	chmp1b	ENSMAMP00000013653	ENSMAMP00000017861	Charged multivesicular body protein 6.	Chromatin modifying protein 1B.	0.844
ENSMAMP00000013653	chmp2a	ENSMAMP00000013653	ENSMAMP00000010379	Charged multivesicular body protein 6.	Charged multivesicular body protein 2A.	0.977
ENSMAMP00000013653	chmp2b	ENSMAMP00000013653	ENSMAMP00000027352	Charged multivesicular body protein 6.	Charged multivesicular body protein 2Bb.	0.886
ENSMAMP00000013653	chmp3	ENSMAMP00000013653	ENSMAMP00000003855	Charged multivesicular body protein 6.	Charged multivesicular body protein 3.	0.976
ENSMAMP00000013653	chmp7	ENSMAMP00000013653	ENSMAMP00000007042	Charged multivesicular body protein 6.	Charged multivesicular body protein 7.	0.922
ENSMAMP00000013653	mvb12a	ENSMAMP00000013653	ENSMAMP00000020368	Charged multivesicular body protein 6.	Uncharacterized protein.	0.707
ENSMAMP00000013653	pdcd6ip	ENSMAMP00000013653	ENSMAMP00000017406	Charged multivesicular body protein 6.	Programmed cell death 6 interacting protein.	0.697
ENSMAMP00000013653	ptpn23	ENSMAMP00000013653	ENSMAMP00000017990	Charged multivesicular body protein 6.	Protein tyrosine phosphatase, non-receptor type 23, a.	0.436