13 items (Mastacembelus armatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	derl1	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family. (253 aa)
	cltc	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family. (1685 aa)
	ENSMAMP00000007794	PDZ domain containing 3b. (529 aa)
	selenos	Selenoprotein S. (186 aa)
	ENSMAMP00000020590	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family. (1676 aa)
	cltcl1	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family. (1694 aa)
	LOC113133939	RING-CH-type domain-containing protein. (924 aa)
	amfr	Autocrine motility factor receptor b. (620 aa)
	yipf5	Protein YIPF. (257 aa)
	ENSMAMP00000033381	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily. (445 aa)
	MARCHF6	Membrane associated ring-CH-type finger 6. (915 aa)
	chmp3	Charged multivesicular body protein 3. (221 aa)
	LOC113125697	Uncharacterized protein. (430 aa)

Your Current Organism:

Mastacembelus armatus

NCBI taxonomy Id: 205130
Other names: M. armatus, Macrognathus armatus, zig-zag eel

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSMAMP00000020590	cltcl1	ENSMAMP00000020590	ENSMAMP00000020732	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.885
LOC113133939	MARCHF6	ENSMAMP00000023368	ENSMAMP00000034163	RING-CH-type domain-containing protein.	Membrane associated ring-CH-type finger 6.	0.842
LOC113133939	amfr	ENSMAMP00000023368	ENSMAMP00000030059	RING-CH-type domain-containing protein.	Autocrine motility factor receptor b.	0.804
LOC113133939	derl1	ENSMAMP00000023368	ENSMAMP00000001282	RING-CH-type domain-containing protein.	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	0.578
MARCHF6	LOC113133939	ENSMAMP00000034163	ENSMAMP00000023368	Membrane associated ring-CH-type finger 6.	RING-CH-type domain-containing protein.	0.842
MARCHF6	amfr	ENSMAMP00000034163	ENSMAMP00000030059	Membrane associated ring-CH-type finger 6.	Autocrine motility factor receptor b.	0.804
MARCHF6	derl1	ENSMAMP00000034163	ENSMAMP00000001282	Membrane associated ring-CH-type finger 6.	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	0.578
amfr	LOC113133939	ENSMAMP00000030059	ENSMAMP00000023368	Autocrine motility factor receptor b.	RING-CH-type domain-containing protein.	0.804
amfr	MARCHF6	ENSMAMP00000030059	ENSMAMP00000034163	Autocrine motility factor receptor b.	Membrane associated ring-CH-type finger 6.	0.804
amfr	derl1	ENSMAMP00000030059	ENSMAMP00000001282	Autocrine motility factor receptor b.	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	0.983
amfr	selenos	ENSMAMP00000030059	ENSMAMP00000015616	Autocrine motility factor receptor b.	Selenoprotein S.	0.513
amfr	yipf5	ENSMAMP00000030059	ENSMAMP00000031783	Autocrine motility factor receptor b.	Protein YIPF.	0.410
cltc	cltcl1	ENSMAMP00000007597	ENSMAMP00000020732	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.885
cltcl1	ENSMAMP00000020590	ENSMAMP00000020732	ENSMAMP00000020590	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.885
cltcl1	cltc	ENSMAMP00000020732	ENSMAMP00000007597	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.885
derl1	LOC113133939	ENSMAMP00000001282	ENSMAMP00000023368	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	RING-CH-type domain-containing protein.	0.578
derl1	MARCHF6	ENSMAMP00000001282	ENSMAMP00000034163	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	Membrane associated ring-CH-type finger 6.	0.578
derl1	amfr	ENSMAMP00000001282	ENSMAMP00000030059	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	Autocrine motility factor receptor b.	0.983
derl1	selenos	ENSMAMP00000001282	ENSMAMP00000015616	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	Selenoprotein S.	0.966
derl1	yipf5	ENSMAMP00000001282	ENSMAMP00000031783	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	Protein YIPF.	0.913