(14 nodes) Preribosome, small subunit precursor network (Mastacembelus armatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rrp1b	Uncharacterized protein. (1015 aa)
	riok3	Serine/threonine-protein kinase RIO3; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family. (514 aa)
	riok2	RIO kinase 2 (yeast). (511 aa)
	LOC113132379	LTV1 ribosome biogenesis factor. (476 aa)
	nop14	NOP14 nucleolar protein homolog (yeast). (870 aa)
	nop9	Uncharacterized protein. (607 aa)
	tsr1	TSR1 ribosome maturation factor. (842 aa)
	riok1	Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family. (547 aa)
	bysl	Bystin-like. (437 aa)
	noc4l	Nucleolar complex associated 4 homolog. (530 aa)
	ENSMAMP00000008750	Premelanosome protein b. (506 aa)
	rsl24d1	Ribosomal L24 domain containing 1. (164 aa)
	LOC113128310	LTV1 ribosome biogenesis factor. (476 aa)
	nsa2	NSA2 ribosome biogenesis homolog (S. cerevisiae). (260 aa)

Your Current Organism:

Mastacembelus armatus

NCBI taxonomy Id: 205130
Other names: M. armatus, Macrognathus armatus, zig-zag eel

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSMAMP00000008750	LOC113128310	ENSMAMP00000008750	ENSMAMP00000000797	Premelanosome protein b.	LTV1 ribosome biogenesis factor.	0.757
ENSMAMP00000008750	LOC113132379	ENSMAMP00000008750	ENSMAMP00000019833	Premelanosome protein b.	LTV1 ribosome biogenesis factor.	0.757
ENSMAMP00000008750	bysl	ENSMAMP00000008750	ENSMAMP00000035563	Premelanosome protein b.	Bystin-like.	0.990
ENSMAMP00000008750	nop14	ENSMAMP00000008750	ENSMAMP00000021392	Premelanosome protein b.	NOP14 nucleolar protein homolog (yeast).	0.996
ENSMAMP00000008750	nop9	ENSMAMP00000008750	ENSMAMP00000022289	Premelanosome protein b.	Uncharacterized protein.	0.585
ENSMAMP00000008750	riok2	ENSMAMP00000008750	ENSMAMP00000019798	Premelanosome protein b.	RIO kinase 2 (yeast).	0.661
ENSMAMP00000008750	rrp1b	ENSMAMP00000008750	ENSMAMP00000010567	Premelanosome protein b.	Uncharacterized protein.	0.888
ENSMAMP00000008750	rsl24d1	ENSMAMP00000008750	ENSMAMP00000003358	Premelanosome protein b.	Ribosomal L24 domain containing 1.	0.761
ENSMAMP00000008750	tsr1	ENSMAMP00000008750	ENSMAMP00000026648	Premelanosome protein b.	TSR1 ribosome maturation factor.	0.836
LOC113128310	ENSMAMP00000008750	ENSMAMP00000000797	ENSMAMP00000008750	LTV1 ribosome biogenesis factor.	Premelanosome protein b.	0.757
LOC113128310	bysl	ENSMAMP00000000797	ENSMAMP00000035563	LTV1 ribosome biogenesis factor.	Bystin-like.	0.997
LOC113128310	noc4l	ENSMAMP00000000797	ENSMAMP00000010874	LTV1 ribosome biogenesis factor.	Nucleolar complex associated 4 homolog.	0.850
LOC113128310	nop14	ENSMAMP00000000797	ENSMAMP00000021392	LTV1 ribosome biogenesis factor.	NOP14 nucleolar protein homolog (yeast).	0.914
LOC113128310	nsa2	ENSMAMP00000000797	ENSMAMP00000000584	LTV1 ribosome biogenesis factor.	NSA2 ribosome biogenesis homolog (S. cerevisiae).	0.795
LOC113128310	riok1	ENSMAMP00000000797	ENSMAMP00000029043	LTV1 ribosome biogenesis factor.	Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family.	0.977
LOC113128310	riok2	ENSMAMP00000000797	ENSMAMP00000019798	LTV1 ribosome biogenesis factor.	RIO kinase 2 (yeast).	0.996
LOC113128310	riok3	ENSMAMP00000000797	ENSMAMP00000012621	LTV1 ribosome biogenesis factor.	Serine/threonine-protein kinase RIO3; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family.	0.947
LOC113128310	rrp1b	ENSMAMP00000000797	ENSMAMP00000010567	LTV1 ribosome biogenesis factor.	Uncharacterized protein.	0.781
LOC113128310	rsl24d1	ENSMAMP00000000797	ENSMAMP00000003358	LTV1 ribosome biogenesis factor.	Ribosomal L24 domain containing 1.	0.885
LOC113128310	tsr1	ENSMAMP00000000797	ENSMAMP00000026648	LTV1 ribosome biogenesis factor.	TSR1 ribosome maturation factor.	0.996