15 items (Mastacembelus armatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC113142824	Neuregulin 2a. (596 aa)
	LOC113140692	Zgc:55558. (223 aa)
	hras	HRas proto-oncogene, GTPase a. (189 aa)
	kras	V-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog. (189 aa)
	ENSMAMP00000010605	EGF-like domain-containing protein. (93 aa)
	ENSMAMP00000012126	EGF-like domain-containing protein. (109 aa)
	grb2	Growth factor receptor-bound protein 2b. (217 aa)
	CSDE1	Cold shock domain containing E1, RNA-binding. (879 aa)
	SHC4	SHC adaptor protein 4. (571 aa)
	ereg	EGF-like domain-containing protein. (172 aa)
	shc1	SHC (Src homology 2 domain containing) transforming protein 1. (453 aa)
	ENSMAMP00000022336	EGF-like domain-containing protein. (107 aa)
	ENSMAMP00000022946	Neuregulin 2b. (696 aa)
	ENSMAMP00000024812	Betacellulin, epidermal growth factor family member. (223 aa)
	ENSMAMP00000033614	Neuregulin 1. (657 aa)

Your Current Organism:

Mastacembelus armatus

NCBI taxonomy Id: 205130
Other names: M. armatus, Macrognathus armatus, zig-zag eel

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSDE1	ENSMAMP00000022946	ENSMAMP00000013132	ENSMAMP00000022946	Cold shock domain containing E1, RNA-binding.	Neuregulin 2b.	0.550
CSDE1	ENSMAMP00000024812	ENSMAMP00000013132	ENSMAMP00000024812	Cold shock domain containing E1, RNA-binding.	Betacellulin, epidermal growth factor family member.	0.539
CSDE1	ENSMAMP00000033614	ENSMAMP00000013132	ENSMAMP00000033614	Cold shock domain containing E1, RNA-binding.	Neuregulin 1.	0.550
CSDE1	LOC113142824	ENSMAMP00000013132	ENSMAMP00000027188	Cold shock domain containing E1, RNA-binding.	Neuregulin 2a.	0.550
CSDE1	SHC4	ENSMAMP00000013132	ENSMAMP00000017220	Cold shock domain containing E1, RNA-binding.	SHC adaptor protein 4.	0.522
CSDE1	ereg	ENSMAMP00000013132	ENSMAMP00000017707	Cold shock domain containing E1, RNA-binding.	EGF-like domain-containing protein.	0.557
CSDE1	grb2	ENSMAMP00000013132	ENSMAMP00000012749	Cold shock domain containing E1, RNA-binding.	Growth factor receptor-bound protein 2b.	0.802
CSDE1	shc1	ENSMAMP00000013132	ENSMAMP00000020899	Cold shock domain containing E1, RNA-binding.	SHC (Src homology 2 domain containing) transforming protein 1.	0.522
ENSMAMP00000010605	ENSMAMP00000012126	ENSMAMP00000010605	ENSMAMP00000012126	EGF-like domain-containing protein.	EGF-like domain-containing protein.	0.860
ENSMAMP00000010605	ENSMAMP00000022946	ENSMAMP00000010605	ENSMAMP00000022946	EGF-like domain-containing protein.	Neuregulin 2b.	0.621
ENSMAMP00000012126	ENSMAMP00000010605	ENSMAMP00000012126	ENSMAMP00000010605	EGF-like domain-containing protein.	EGF-like domain-containing protein.	0.860
ENSMAMP00000012126	ENSMAMP00000022336	ENSMAMP00000012126	ENSMAMP00000022336	EGF-like domain-containing protein.	EGF-like domain-containing protein.	0.860
ENSMAMP00000012126	ENSMAMP00000022946	ENSMAMP00000012126	ENSMAMP00000022946	EGF-like domain-containing protein.	Neuregulin 2b.	0.878
ENSMAMP00000012126	ENSMAMP00000024812	ENSMAMP00000012126	ENSMAMP00000024812	EGF-like domain-containing protein.	Betacellulin, epidermal growth factor family member.	0.454
ENSMAMP00000012126	ENSMAMP00000033614	ENSMAMP00000012126	ENSMAMP00000033614	EGF-like domain-containing protein.	Neuregulin 1.	0.878
ENSMAMP00000012126	LOC113142824	ENSMAMP00000012126	ENSMAMP00000027188	EGF-like domain-containing protein.	Neuregulin 2a.	0.878
ENSMAMP00000022336	ENSMAMP00000012126	ENSMAMP00000022336	ENSMAMP00000012126	EGF-like domain-containing protein.	EGF-like domain-containing protein.	0.860
ENSMAMP00000022336	ENSMAMP00000022946	ENSMAMP00000022336	ENSMAMP00000022946	EGF-like domain-containing protein.	Neuregulin 2b.	0.621
ENSMAMP00000022946	CSDE1	ENSMAMP00000022946	ENSMAMP00000013132	Neuregulin 2b.	Cold shock domain containing E1, RNA-binding.	0.550
ENSMAMP00000022946	ENSMAMP00000010605	ENSMAMP00000022946	ENSMAMP00000010605	Neuregulin 2b.	EGF-like domain-containing protein.	0.621