33 items (Mastacembelus armatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	prim2	DNA primase large subunit; Regulatory subunit of the DNA primase complex and component of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which play an essential role in the initiation of DNA synthesis. The primase subunit of the polymerase alpha complex initiates DNA synthesis by oligomerising short RNA primers on both leading and lagging strands. (540 aa)
	LOC113121578	TINF2_N domain-containing protein. (585 aa)
	pcna	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (260 aa)
	terf2ip	Uncharacterized protein. (755 aa)
	ENSMAMP00000021732	Replication factor C (activator 1) 3. (423 aa)
	RFC2	Replication factor C (activator 1) 2. (359 aa)
	ENSMAMP00000019064	ATPase_AAA_core domain-containing protein. (146 aa)
	ENSMAMP00000019030	ATPase_AAA_core domain-containing protein. (97 aa)
	ENSMAMP00000018993	ATPase_AAA_core domain-containing protein. (157 aa)
	ENSMAMP00000018114	Uncharacterized protein. (493 aa)
	chtf8	CTF8, chromosome transmission fidelity factor 8 homolog (S. cerevisiae). (135 aa)
	rcbtb2	Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2. (527 aa)
	ENSMAMP00000016915	Uncharacterized protein. (1070 aa)
	pola2	DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis. (602 aa)
	pold1	DNA polymerase. (1119 aa)
	pold4	Si:dkey-28b4.7. (108 aa)
	ENSMAMP00000016811	Uncharacterized protein. (1097 aa)
	ENSMAMP00000006478	STN1 subunit of CST complex. (338 aa)
	rfc5	Replication factor C (activator 1) 5. (335 aa)
	rfc4	Replication factor C (activator 1) 4. (376 aa)
	pold2	Polymerase (DNA directed), delta 2, regulatory subunit. (470 aa)
	chtf18	CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae). (947 aa)
	pold3	Polymerase (DNA-directed), delta 3, accessory subunit. (441 aa)
	ENSMAMP00000016724	Uncharacterized protein. (1090 aa)
	prim1	DNA primase; Belongs to the eukaryotic-type primase small subunit family. (419 aa)
	pola1	DNA polymerase. (1480 aa)
	dscc1	DNA replication and sister chromatid cohesion 1. (390 aa)
	ENSMAMP00000033957	Protection of telomeres 1 homolog. (805 aa)
	LOC113127185	Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1. (529 aa)
	LOC113146398	HTH myb-type domain-containing protein. (608 aa)
	ENSMAMP00000029947	Replication factor C subunit 1. (1137 aa)
	RCBTB1	RCC1 and BTB domain containing protein 1. (531 aa)
	ENSMAMP00000024977	TEN1 subunit of CST complex. (144 aa)

Your Current Organism:

Mastacembelus armatus

NCBI taxonomy Id: 205130
Other names: M. armatus, Macrognathus armatus, zig-zag eel

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSMAMP00000006478	ENSMAMP00000016724	ENSMAMP00000006478	ENSMAMP00000016724	STN1 subunit of CST complex.	Uncharacterized protein.	0.971
ENSMAMP00000006478	ENSMAMP00000016811	ENSMAMP00000006478	ENSMAMP00000016811	STN1 subunit of CST complex.	Uncharacterized protein.	0.971
ENSMAMP00000006478	ENSMAMP00000016915	ENSMAMP00000006478	ENSMAMP00000016915	STN1 subunit of CST complex.	Uncharacterized protein.	0.971
ENSMAMP00000006478	ENSMAMP00000018114	ENSMAMP00000006478	ENSMAMP00000018114	STN1 subunit of CST complex.	Uncharacterized protein.	0.893
ENSMAMP00000006478	ENSMAMP00000018993	ENSMAMP00000006478	ENSMAMP00000018993	STN1 subunit of CST complex.	ATPase_AAA_core domain-containing protein.	0.784
ENSMAMP00000006478	ENSMAMP00000019030	ENSMAMP00000006478	ENSMAMP00000019030	STN1 subunit of CST complex.	ATPase_AAA_core domain-containing protein.	0.784
ENSMAMP00000006478	ENSMAMP00000019064	ENSMAMP00000006478	ENSMAMP00000019064	STN1 subunit of CST complex.	ATPase_AAA_core domain-containing protein.	0.784
ENSMAMP00000006478	ENSMAMP00000021732	ENSMAMP00000006478	ENSMAMP00000021732	STN1 subunit of CST complex.	Replication factor C (activator 1) 3.	0.855
ENSMAMP00000006478	ENSMAMP00000024977	ENSMAMP00000006478	ENSMAMP00000024977	STN1 subunit of CST complex.	TEN1 subunit of CST complex.	0.996
ENSMAMP00000006478	ENSMAMP00000029947	ENSMAMP00000006478	ENSMAMP00000029947	STN1 subunit of CST complex.	Replication factor C subunit 1.	0.744
ENSMAMP00000006478	ENSMAMP00000033957	ENSMAMP00000006478	ENSMAMP00000033957	STN1 subunit of CST complex.	Protection of telomeres 1 homolog.	0.813
ENSMAMP00000006478	LOC113121578	ENSMAMP00000006478	ENSMAMP00000022618	STN1 subunit of CST complex.	TINF2_N domain-containing protein.	0.834
ENSMAMP00000006478	LOC113146398	ENSMAMP00000006478	ENSMAMP00000030199	STN1 subunit of CST complex.	HTH myb-type domain-containing protein.	0.684
ENSMAMP00000006478	RFC2	ENSMAMP00000006478	ENSMAMP00000019104	STN1 subunit of CST complex.	Replication factor C (activator 1) 2.	0.784
ENSMAMP00000006478	chtf18	ENSMAMP00000006478	ENSMAMP00000013010	STN1 subunit of CST complex.	CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae).	0.672
ENSMAMP00000006478	chtf8	ENSMAMP00000006478	ENSMAMP00000017668	STN1 subunit of CST complex.	CTF8, chromosome transmission fidelity factor 8 homolog (S. cerevisiae).	0.670
ENSMAMP00000006478	dscc1	ENSMAMP00000006478	ENSMAMP00000035708	STN1 subunit of CST complex.	DNA replication and sister chromatid cohesion 1.	0.687
ENSMAMP00000006478	pcna	ENSMAMP00000006478	ENSMAMP00000022273	STN1 subunit of CST complex.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.911
ENSMAMP00000006478	pola1	ENSMAMP00000006478	ENSMAMP00000034117	STN1 subunit of CST complex.	DNA polymerase.	0.983
ENSMAMP00000006478	pola2	ENSMAMP00000006478	ENSMAMP00000000817	STN1 subunit of CST complex.	DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis.	0.964