50 items (Mastacembelus armatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ddb1	Damage-specific DNA binding protein 1. (1140 aa)
	cops3	COP9 signalosome subunit 3. (445 aa)
	wdr76	WD repeat-containing protein 76; Specifically binds 5-hydroxymethylcytosine (5hmC), suggesting that it acts as a specific reader of 5hmC. Belongs to the WD repeat DDB2/WDR76 family. (566 aa)
	LOC113142672	YY1 transcription factor. (350 aa)
	rpap3	RNA polymerase II associated protein 3. (668 aa)
	gps1	G protein pathway suppressor 1. (487 aa)
	ENSMAMP00000005181	COP9 constitutive photomorphogenic homolog subunit 7A. (336 aa)
	ENSMAMP00000005451	Cullin 4A; Belongs to the cullin family. (684 aa)
	ino80e	INO80 complex subunit E. (282 aa)
	ENSMAMP00000006223	Si:cabz01080528.1. (716 aa)
	ENSMAMP00000006861	Microspherule protein 1. (450 aa)
	cops4	COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis). (406 aa)
	ddb2	Damage-specific DNA binding protein 2. (527 aa)
	actb	Uncharacterized protein. (377 aa)
	LOC113134865	Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
	uba52	Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
	ino80d	INO80 complex subunit Da. (994 aa)
	cetn3	Centrin 3. (167 aa)
	rbx1	Ring-box 1, E3 ubiquitin protein ligase. (108 aa)
	kxd1	KxDL motif containing 1. (184 aa)
	ENSMAMP00000011048	Uncharacterized protein. (139 aa)
	LOC113127863	Uncharacterized protein. (376 aa)
	parp2	Poly [ADP-ribose] polymerase. (649 aa)
	cops8	COP9 signalosome subunit 8. (191 aa)
	LOC113139161	Si:ch73-290k24.6. (843 aa)
	ENSMAMP00000016318	Von Willebrand factor A domain containing 5B2. (1046 aa)
	ino80c	INO80 complex subunit C. (211 aa)
	cops2	COP9 signalosome subunit 2. (443 aa)
	YY1	YY1 transcription factor b. (364 aa)
	ENSMAMP00000020458	Uncharacterized protein. (189 aa)
	RAD23B	RAD23 homolog B, nucleotide excision repair protein. (386 aa)
	ino80b	INO80 complex subunit B. (339 aa)
	LOC113144354	Centrin 4. (171 aa)
	rad23a	RAD23 homolog A, nucleotide excision repair protein a. (375 aa)
	ENSMAMP00000023641	Xeroderma pigmentosum, complementation group C. (870 aa)
	LOC113128667	Uncharacterized protein. (506 aa)
	actr8	Actin-related protein 8; Plays an important role in the functional organization of mitotic chromosomes. Exhibits low basal ATPase activity, and unable to polymerize; Belongs to the actin family. ARP8 subfamily. (644 aa)
	actr5	Actin related protein 5; Belongs to the actin family. (623 aa)
	nfrkb	Nuclear factor related to kappaB binding protein. (1280 aa)
	LOC113138689	Uncharacterized protein. (422 aa)
	COPS6	COP9 signalosome subunit 6. (316 aa)
	ENSMAMP00000028361	Si:dkey-117m1.4. (753 aa)
	tfpt	TCF3 (E2A) fusion partner. (199 aa)
	cul4b	Cullin 4B; Belongs to the cullin family. (870 aa)
	parp1	Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair. (1010 aa)
	LOC113139794	RAD23 homolog A, nucleotide excision repair protein b. (461 aa)
	rps27a	Ribosomal protein S27a. (156 aa)
	cops5	COP9 signalosome subunit 5. (334 aa)
	parp3	Poly [ADP-ribose] polymerase. (531 aa)
	ruvbl1	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding. (456 aa)

Your Current Organism:

Mastacembelus armatus

NCBI taxonomy Id: 205130
Other names: M. armatus, Macrognathus armatus, zig-zag eel

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
COPS6	ENSMAMP00000005181	ENSMAMP00000028098	ENSMAMP00000005181	COP9 signalosome subunit 6.	COP9 constitutive photomorphogenic homolog subunit 7A.	0.997
COPS6	ENSMAMP00000005451	ENSMAMP00000028098	ENSMAMP00000005451	COP9 signalosome subunit 6.	Cullin 4A; Belongs to the cullin family.	0.948
COPS6	ENSMAMP00000006861	ENSMAMP00000028098	ENSMAMP00000006861	COP9 signalosome subunit 6.	Microspherule protein 1.	0.593
COPS6	ENSMAMP00000011048	ENSMAMP00000028098	ENSMAMP00000011048	COP9 signalosome subunit 6.	Uncharacterized protein.	0.831
COPS6	ENSMAMP00000023641	ENSMAMP00000028098	ENSMAMP00000023641	COP9 signalosome subunit 6.	Xeroderma pigmentosum, complementation group C.	0.657
COPS6	LOC113127863	ENSMAMP00000028098	ENSMAMP00000011210	COP9 signalosome subunit 6.	Uncharacterized protein.	0.458
COPS6	LOC113134865	ENSMAMP00000028098	ENSMAMP00000009351	COP9 signalosome subunit 6.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.895
COPS6	LOC113138689	ENSMAMP00000028098	ENSMAMP00000026960	COP9 signalosome subunit 6.	Uncharacterized protein.	0.458
COPS6	LOC113139794	ENSMAMP00000028098	ENSMAMP00000033003	COP9 signalosome subunit 6.	RAD23 homolog A, nucleotide excision repair protein b.	0.785
COPS6	LOC113142672	ENSMAMP00000028098	ENSMAMP00000002160	COP9 signalosome subunit 6.	YY1 transcription factor.	0.565
COPS6	LOC113144354	ENSMAMP00000028098	ENSMAMP00000022622	COP9 signalosome subunit 6.	Centrin 4.	0.670
COPS6	RAD23B	ENSMAMP00000028098	ENSMAMP00000021299	COP9 signalosome subunit 6.	RAD23 homolog B, nucleotide excision repair protein.	0.785
COPS6	YY1	ENSMAMP00000028098	ENSMAMP00000018931	COP9 signalosome subunit 6.	YY1 transcription factor b.	0.565
COPS6	actb	ENSMAMP00000028098	ENSMAMP00000009048	COP9 signalosome subunit 6.	Uncharacterized protein.	0.458
COPS6	actr5	ENSMAMP00000028098	ENSMAMP00000025864	COP9 signalosome subunit 6.	Actin related protein 5; Belongs to the actin family.	0.621
COPS6	actr8	ENSMAMP00000028098	ENSMAMP00000025014	COP9 signalosome subunit 6.	Actin-related protein 8; Plays an important role in the functional organization of mitotic chromosomes. Exhibits low basal ATPase activity, and unable to polymerize; Belongs to the actin family. ARP8 subfamily.	0.664
COPS6	cetn3	ENSMAMP00000028098	ENSMAMP00000010070	COP9 signalosome subunit 6.	Centrin 3.	0.670
COPS6	cops2	ENSMAMP00000028098	ENSMAMP00000017367	COP9 signalosome subunit 6.	COP9 signalosome subunit 2.	0.999
COPS6	cops3	ENSMAMP00000028098	ENSMAMP00000000654	COP9 signalosome subunit 6.	COP9 signalosome subunit 3.	0.999
COPS6	cops4	ENSMAMP00000028098	ENSMAMP00000007088	COP9 signalosome subunit 6.	COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis).	0.999