STRINGSTRING
xrcc1 xrcc1 cops3 cops3 rpa3 rpa3 lig3 lig3 ENSMAMP00000001669 ENSMAMP00000001669 uvssa uvssa pold1 pold1 mnat1 mnat1 polr2h polr2h ENSMAMP00000003022 ENSMAMP00000003022 gps1 gps1 pold4 pold4 ercc5 ercc5 polr2a polr2a ENSMAMP00000005181 ENSMAMP00000005181 ENSMAMP00000005185 ENSMAMP00000005185 LOC113129257 LOC113129257 pole4 pole4 ENSMAMP00000005451 ENSMAMP00000005451 ENSMAMP00000005479 ENSMAMP00000005479 ercc6 ercc6 usp7 usp7 usp40 usp40 gtf2h1 gtf2h1 ercc3 ercc3 ercc4 ercc4 rfc5 rfc5 cops4 cops4 tceanc2 tceanc2 aqr aqr meiob meiob pole2 pole2 LOC113134865 LOC113134865 uba52 uba52 LOC113141669 LOC113141669 LOC113145057 LOC113145057 prpf19 prpf19 rfc4 rfc4 rbx1 rbx1 rpa2 rpa2 kxd1 kxd1 pold2 pold2 ENSMAMP00000011048 ENSMAMP00000011048 GTF2H5 GTF2H5 LOC113137302 LOC113137302 LOC113137302-2 LOC113137302-2 polr2f polr2f ENSMAMP00000013291 ENSMAMP00000013291 polr2j polr2j cops8 cops8 LOC113130904 LOC113130904 ppie ppie ENSMAMP00000015134 ENSMAMP00000015134 pold3 pold3 ccnh ccnh cops2 cops2 rcbtb2 rcbtb2 polk polk ENSMAMP00000018993 ENSMAMP00000018993 ENSMAMP00000019030 ENSMAMP00000019030 ENSMAMP00000019064 ENSMAMP00000019064 RFC2 RFC2 xab2 xab2 cdk7 cdk7 polr2c polr2c nrde2 nrde2 polr2i polr2i polr2k polr2k ddb1 ddb1 ENSMAMP00000021595 ENSMAMP00000021595 ENSMAMP00000021732 ENSMAMP00000021732 polr2b polr2b ZNF830 ZNF830 pole pole pcna pcna ENSMAMP00000022904 ENSMAMP00000022904 ercc2 ercc2 RCBTB1 RCBTB1 LOC113132996 LOC113132996 pole3 pole3 tcea1 tcea1 rpa1 rpa1 gtf2h3 gtf2h3 POLR2E POLR2E ENSMAMP00000027941 ENSMAMP00000027941 COPS6 COPS6 ercc1 ercc1 RPA1 RPA1 cul4b cul4b ENSMAMP00000029947 ENSMAMP00000029947 gtf2h4 gtf2h4 ercc8 ercc8 LOC113127185 LOC113127185 ENSMAMP00000032458 ENSMAMP00000032458 polr2l polr2l rps27a rps27a cops5 cops5 ppp1r42 ppp1r42 ENSMAMP00000035212 ENSMAMP00000035212 tcea3 tcea3
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
xrcc1X-ray repair complementing defective repair in Chinese hamster cells 1. (630 aa)
cops3COP9 signalosome subunit 3. (445 aa)
rpa3Replication protein A3. (122 aa)
lig3DNA ligase. (1011 aa)
ENSMAMP00000001669Polymerase (RNA) II (DNA directed) polypeptide G-like. (163 aa)
uvssaUV-stimulated scaffold protein A. (784 aa)
pold1DNA polymerase. (1119 aa)
mnat1CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex. (311 aa)
polr2hInfo polymerase (RNA) II (DNA directed) polypeptide H. (162 aa)
ENSMAMP00000003022Uncharacterized protein. (510 aa)
gps1G protein pathway suppressor 1. (487 aa)
pold4Si:dkey-28b4.7. (108 aa)
ercc5Excision repair cross-complementation group 5. (1147 aa)
polr2aDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1966 aa)
ENSMAMP00000005181COP9 constitutive photomorphogenic homolog subunit 7A. (336 aa)
ENSMAMP00000005185E1A binding protein p300 a. (2641 aa)
LOC113129257SCY domain-containing protein. (124 aa)
pole4Polymerase (DNA-directed), epsilon 4, accessory subunit. (126 aa)
ENSMAMP00000005451Cullin 4A; Belongs to the cullin family. (684 aa)
ENSMAMP00000005479Si:ch73-1a9.3. (79 aa)
ercc6Excision repair cross-complementation group 6. (1443 aa)
usp7Ubiquitin specific peptidase 7 (herpes virus-associated); Belongs to the peptidase C19 family. (1113 aa)
usp40Ubiquitin specific peptidase 40; Belongs to the peptidase C19 family. (1287 aa)
gtf2h1General transcription factor IIH, polypeptide 1. (549 aa)
ercc3Excision repair cross-complementation group 3. (783 aa)
ercc4Excision repair cross-complementation group 4. (900 aa)
rfc5Replication factor C (activator 1) 5. (335 aa)
cops4COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis). (406 aa)
tceanc2Uncharacterized protein. (208 aa)
aqrAquarius intron-binding spliceosomal factor. (1470 aa)
meiobMethionine sulfoxide reductase B1b. (469 aa)
pole2DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (528 aa)
LOC113134865Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
uba52Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
LOC113141669E1A binding protein p300 b. (2848 aa)
LOC113145057Transcription elongation factor A (SII), 2. (305 aa)
prpf19Pre-mRNA processing factor 19. (505 aa)
rfc4Replication factor C (activator 1) 4. (376 aa)
rbx1Ring-box 1, E3 ubiquitin protein ligase. (108 aa)
rpa2Replication protein A2. (272 aa)
kxd1KxDL motif containing 1. (184 aa)
pold2Polymerase (DNA directed), delta 2, regulatory subunit. (470 aa)
ENSMAMP00000011048Uncharacterized protein. (139 aa)
GTF2H5General transcription factor IIH, polypeptide 5. (71 aa)
LOC113137302General transcription factor IIH subunit 5. (71 aa)
LOC113137302-2General transcription factor IIH subunit 5. (71 aa)
polr2fPolymerase (RNA) II (DNA directed) polypeptide F. (127 aa)
ENSMAMP00000013291DNA ligase. (987 aa)
polr2jPolymerase (RNA) II (DNA directed) polypeptide J. (117 aa)
cops8COP9 signalosome subunit 8. (191 aa)
LOC113130904ISY1 splicing factor homolog. (283 aa)
ppiePeptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (302 aa)
ENSMAMP00000015134Basic, immunoglobulin-like variable motif containing. (481 aa)
pold3Polymerase (DNA-directed), delta 3, accessory subunit. (441 aa)
ccnhCyclin H; Belongs to the cyclin family. (326 aa)
cops2COP9 signalosome subunit 2. (443 aa)
rcbtb2Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2. (527 aa)
polkPolymerase (DNA directed) kappa. (885 aa)
ENSMAMP00000018993ATPase_AAA_core domain-containing protein. (157 aa)
ENSMAMP00000019030ATPase_AAA_core domain-containing protein. (97 aa)
ENSMAMP00000019064ATPase_AAA_core domain-containing protein. (146 aa)
RFC2Replication factor C (activator 1) 2. (359 aa)
xab2XPA binding protein 2. (848 aa)
cdk7Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily. (343 aa)
polr2cPolymerase (RNA) II (DNA directed) polypeptide C. (275 aa)
nrde2NRDE-2, necessary for RNA interference, domain containing. (1201 aa)
polr2iDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (126 aa)
polr2kPolymerase (RNA) II (DNA directed) polypeptide K. (58 aa)
ddb1Damage-specific DNA binding protein 1. (1140 aa)
ENSMAMP00000021595High mobility group nucleosome binding domain 6. (96 aa)
ENSMAMP00000021732Replication factor C (activator 1) 3. (423 aa)
polr2bDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1174 aa)
ZNF830Zinc finger protein 830. (349 aa)
poleDNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2295 aa)
pcnaProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (260 aa)
ENSMAMP00000022904Xeroderma pigmentosum, complementation group A. (277 aa)
ercc2Excision repair cross-complementation group 2. (760 aa)
RCBTB1RCC1 and BTB domain containing protein 1. (531 aa)
LOC113132996General transcription factor IIH subunit. (392 aa)
pole3Polymerase (DNA directed), epsilon 3 (p17 subunit). (153 aa)
tcea1Transcription elongation factor A (SII), 1. (310 aa)
rpa1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (600 aa)
gtf2h3General transcription factor IIH, polypeptide 3. (334 aa)
POLR2ERNA polymerase II subunit E. (210 aa)
ENSMAMP00000027941RPOL4c domain-containing protein. (112 aa)
COPS6COP9 signalosome subunit 6. (316 aa)
ercc1Excision repair cross-complementation group 1. (352 aa)
RPA1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (672 aa)
cul4bCullin 4B; Belongs to the cullin family. (870 aa)
ENSMAMP00000029947Replication factor C subunit 1. (1137 aa)
gtf2h4General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (461 aa)
ercc8Excision repair cross-complementation group 8. (426 aa)
LOC113127185Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1. (529 aa)
ENSMAMP00000032458PHD finger protein 3. (1486 aa)
polr2lPolymerase (RNA) II (DNA directed) polypeptide L. (67 aa)
rps27aRibosomal protein S27a. (156 aa)
cops5COP9 signalosome subunit 5. (334 aa)
ppp1r42Protein phosphatase 1, regulatory subunit 42. (326 aa)
ENSMAMP00000035212ATPase family AAA domain containing 5a. (1802 aa)
tcea3Transcription elongation factor A (SII), 3. (600 aa)
Your Current Organism:
Mastacembelus armatus
NCBI taxonomy Id: 205130
Other names: M. armatus, Macrognathus armatus, zig-zag eel
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