STRINGSTRING
pole2 pole2 LOC113134865 LOC113134865 uba52 uba52 LOC113141669 LOC113141669 LOC113145057 LOC113145057 prpf19 prpf19 rfc4 rfc4 rbx1 rbx1 rpa2 rpa2 kxd1 kxd1 pold2 pold2 ENSMAMP00000011048 ENSMAMP00000011048 GTF2H5 GTF2H5 LOC113137302 LOC113137302 LOC113137302-2 LOC113137302-2 polr2f polr2f ENSMAMP00000013291 ENSMAMP00000013291 xrcc1 xrcc1 polr2j polr2j LOC113130904 LOC113130904 ppie ppie pold3 pold3 ccnh ccnh rcbtb2 rcbtb2 polk polk ENSMAMP00000018993 ENSMAMP00000018993 ENSMAMP00000019030 ENSMAMP00000019030 ENSMAMP00000019064 ENSMAMP00000019064 RFC2 RFC2 xab2 xab2 cdk7 cdk7 polr2c polr2c nrde2 nrde2 polr2i polr2i polr2k polr2k tcea3 tcea3 ENSMAMP00000035212 ENSMAMP00000035212 rps27a rps27a polr2l polr2l ENSMAMP00000032458 ENSMAMP00000032458 LOC113127185 LOC113127185 ercc8 ercc8 gtf2h4 gtf2h4 ENSMAMP00000029947 ENSMAMP00000029947 cul4b cul4b RPA1 RPA1 ENSMAMP00000027941 ENSMAMP00000027941 POLR2E POLR2E gtf2h3 gtf2h3 ENSMAMP00000005451 ENSMAMP00000005451 pole4 pole4 ENSMAMP00000005479 ENSMAMP00000005479 ercc6 ercc6 usp7 usp7 usp40 usp40 ENSMAMP00000005185 ENSMAMP00000005185 polr2a polr2a pold4 pold4 ENSMAMP00000003022 ENSMAMP00000003022 polr2h polr2h gtf2h1 gtf2h1 ercc3 ercc3 mnat1 mnat1 pold1 pold1 uvssa uvssa ENSMAMP00000001669 ENSMAMP00000001669 lig3 lig3 rpa3 rpa3 rpa1 rpa1 tcea1 tcea1 pole3 pole3 LOC113132996 LOC113132996 RCBTB1 RCBTB1 ddb1 ddb1 ercc2 ercc2 pcna pcna pole pole ZNF830 ZNF830 polr2b polr2b ENSMAMP00000021732 ENSMAMP00000021732 ENSMAMP00000021595 ENSMAMP00000021595 rfc5 rfc5 tceanc2 tceanc2 aqr aqr meiob meiob
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
pole2DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (528 aa)
LOC113134865Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
uba52Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
LOC113141669E1A binding protein p300 b. (2848 aa)
LOC113145057Transcription elongation factor A (SII), 2. (305 aa)
prpf19Pre-mRNA processing factor 19. (505 aa)
rfc4Replication factor C (activator 1) 4. (376 aa)
rbx1Ring-box 1, E3 ubiquitin protein ligase. (108 aa)
rpa2Replication protein A2. (272 aa)
kxd1KxDL motif containing 1. (184 aa)
pold2Polymerase (DNA directed), delta 2, regulatory subunit. (470 aa)
ENSMAMP00000011048Uncharacterized protein. (139 aa)
GTF2H5General transcription factor IIH, polypeptide 5. (71 aa)
LOC113137302General transcription factor IIH subunit 5. (71 aa)
LOC113137302-2General transcription factor IIH subunit 5. (71 aa)
polr2fPolymerase (RNA) II (DNA directed) polypeptide F. (127 aa)
ENSMAMP00000013291DNA ligase. (987 aa)
xrcc1X-ray repair complementing defective repair in Chinese hamster cells 1. (630 aa)
polr2jPolymerase (RNA) II (DNA directed) polypeptide J. (117 aa)
LOC113130904ISY1 splicing factor homolog. (283 aa)
ppiePeptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (302 aa)
pold3Polymerase (DNA-directed), delta 3, accessory subunit. (441 aa)
ccnhCyclin H; Belongs to the cyclin family. (326 aa)
rcbtb2Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2. (527 aa)
polkPolymerase (DNA directed) kappa. (885 aa)
ENSMAMP00000018993ATPase_AAA_core domain-containing protein. (157 aa)
ENSMAMP00000019030ATPase_AAA_core domain-containing protein. (97 aa)
ENSMAMP00000019064ATPase_AAA_core domain-containing protein. (146 aa)
RFC2Replication factor C (activator 1) 2. (359 aa)
xab2XPA binding protein 2. (848 aa)
cdk7Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily. (343 aa)
polr2cPolymerase (RNA) II (DNA directed) polypeptide C. (275 aa)
nrde2NRDE-2, necessary for RNA interference, domain containing. (1201 aa)
polr2iDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (126 aa)
polr2kPolymerase (RNA) II (DNA directed) polypeptide K. (58 aa)
tcea3Transcription elongation factor A (SII), 3. (600 aa)
ENSMAMP00000035212ATPase family AAA domain containing 5a. (1802 aa)
rps27aRibosomal protein S27a. (156 aa)
polr2lPolymerase (RNA) II (DNA directed) polypeptide L. (67 aa)
ENSMAMP00000032458PHD finger protein 3. (1486 aa)
LOC113127185Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1. (529 aa)
ercc8Excision repair cross-complementation group 8. (426 aa)
gtf2h4General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (461 aa)
ENSMAMP00000029947Replication factor C subunit 1. (1137 aa)
cul4bCullin 4B; Belongs to the cullin family. (870 aa)
RPA1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (672 aa)
ENSMAMP00000027941RPOL4c domain-containing protein. (112 aa)
POLR2ERNA polymerase II subunit E. (210 aa)
gtf2h3General transcription factor IIH, polypeptide 3. (334 aa)
ENSMAMP00000005451Cullin 4A; Belongs to the cullin family. (684 aa)
pole4Polymerase (DNA-directed), epsilon 4, accessory subunit. (126 aa)
ENSMAMP00000005479Si:ch73-1a9.3. (79 aa)
ercc6Excision repair cross-complementation group 6. (1443 aa)
usp7Ubiquitin specific peptidase 7 (herpes virus-associated); Belongs to the peptidase C19 family. (1113 aa)
usp40Ubiquitin specific peptidase 40; Belongs to the peptidase C19 family. (1287 aa)
ENSMAMP00000005185E1A binding protein p300 a. (2641 aa)
polr2aDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1966 aa)
pold4Si:dkey-28b4.7. (108 aa)
ENSMAMP00000003022Uncharacterized protein. (510 aa)
polr2hInfo polymerase (RNA) II (DNA directed) polypeptide H. (162 aa)
gtf2h1General transcription factor IIH, polypeptide 1. (549 aa)
ercc3Excision repair cross-complementation group 3. (783 aa)
mnat1CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex. (311 aa)
pold1DNA polymerase. (1119 aa)
uvssaUV-stimulated scaffold protein A. (784 aa)
ENSMAMP00000001669Polymerase (RNA) II (DNA directed) polypeptide G-like. (163 aa)
lig3DNA ligase. (1011 aa)
rpa3Replication protein A3. (122 aa)
rpa1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (600 aa)
tcea1Transcription elongation factor A (SII), 1. (310 aa)
pole3Polymerase (DNA directed), epsilon 3 (p17 subunit). (153 aa)
LOC113132996General transcription factor IIH subunit. (392 aa)
RCBTB1RCC1 and BTB domain containing protein 1. (531 aa)
ddb1Damage-specific DNA binding protein 1. (1140 aa)
ercc2Excision repair cross-complementation group 2. (760 aa)
pcnaProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (260 aa)
poleDNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2295 aa)
ZNF830Zinc finger protein 830. (349 aa)
polr2bDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1174 aa)
ENSMAMP00000021732Replication factor C (activator 1) 3. (423 aa)
ENSMAMP00000021595High mobility group nucleosome binding domain 6. (96 aa)
rfc5Replication factor C (activator 1) 5. (335 aa)
tceanc2Uncharacterized protein. (208 aa)
aqrAquarius intron-binding spliceosomal factor. (1470 aa)
meiobMethionine sulfoxide reductase B1b. (469 aa)
Your Current Organism:
Mastacembelus armatus
NCBI taxonomy Id: 205130
Other names: M. armatus, Macrognathus armatus, zig-zag eel
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