STRINGSTRING
fbh1 fbh1 rpa3 rpa3 wdr76 wdr76 ENSMAMP00000001523 ENSMAMP00000001523 pold1 pold1 mnat1 mnat1 ENSMAMP00000003022 ENSMAMP00000003022 yju2 yju2 LOC113137102 LOC113137102 pold4 pold4 ercc5 ercc5 pole4 pole4 ENSMAMP00000005451 ENSMAMP00000005451 RPA1 RPA1 cul4b cul4b ENSMAMP00000029947 ENSMAMP00000029947 gtf2h4 gtf2h4 ercc8 ercc8 LOC113139794 LOC113139794 sass6 sass6 ENSMAMP00000035212 ENSMAMP00000035212 fbxw12 fbxw12 CLSPN CLSPN ercc6 ercc6 ENSMAMP00000006478 ENSMAMP00000006478 gtf2h1 gtf2h1 ercc3 ercc3 ercc4 ercc4 rfc5 rfc5 ENSMAMP00000007615 ENSMAMP00000007615 ddb2 ddb2 meiob meiob pole2 pole2 rfc4 rfc4 rbx1 rbx1 ercc1 ercc1 rpa2 rpa2 pold2 pold2 GTF2H5 GTF2H5 ENSMAMP00000011577 ENSMAMP00000011577 LOC113137302 LOC113137302 LOC113137302-2 LOC113137302-2 ENSMAMP00000013291 ENSMAMP00000013291 LOC113144387 LOC113144387 ENSMAMP00000015134 ENSMAMP00000015134 ddx11 ddx11 pold3 pold3 ccnh ccnh cdk20 cdk20 ENSMAMP00000018805 ENSMAMP00000018805 ENSMAMP00000018993 ENSMAMP00000018993 ENSMAMP00000019030 ENSMAMP00000019030 ENSMAMP00000019064 ENSMAMP00000019064 RFC2 RFC2 cdk7 cdk7 LOC113137952 LOC113137952 ENSMAMP00000019950 ENSMAMP00000019950 RAD23B RAD23B ddb1 ddb1 ENSMAMP00000021732 ENSMAMP00000021732 LOC113132699 LOC113132699 pole pole pcna pcna LOC113144354 LOC113144354 ENSMAMP00000022904 ENSMAMP00000022904 rad23a rad23a ENSMAMP00000023641 ENSMAMP00000023641 ercc2 ercc2 LOC113132996 LOC113132996 pole3 pole3 rpa1 rpa1 gtf2h3 gtf2h3
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
fbh1F-box DNA helicase 1. (1089 aa)
rpa3Replication protein A3. (122 aa)
wdr76WD repeat-containing protein 76; Specifically binds 5-hydroxymethylcytosine (5hmC), suggesting that it acts as a specific reader of 5hmC. Belongs to the WD repeat DDB2/WDR76 family. (566 aa)
ENSMAMP00000001523Uncharacterized protein. (166 aa)
pold1DNA polymerase. (1119 aa)
mnat1CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex. (311 aa)
ENSMAMP00000003022Uncharacterized protein. (510 aa)
yju2YJU2 splicing factor homolog. (341 aa)
LOC113137102Src homology 2 domain containing transforming protein D, a. (418 aa)
pold4Si:dkey-28b4.7. (108 aa)
ercc5Excision repair cross-complementation group 5. (1147 aa)
pole4Polymerase (DNA-directed), epsilon 4, accessory subunit. (126 aa)
ENSMAMP00000005451Cullin 4A; Belongs to the cullin family. (684 aa)
RPA1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (672 aa)
cul4bCullin 4B; Belongs to the cullin family. (870 aa)
ENSMAMP00000029947Replication factor C subunit 1. (1137 aa)
gtf2h4General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (461 aa)
ercc8Excision repair cross-complementation group 8. (426 aa)
LOC113139794RAD23 homolog A, nucleotide excision repair protein b. (461 aa)
sass6SAS-6 centriolar assembly protein. (589 aa)
ENSMAMP00000035212ATPase family AAA domain containing 5a. (1802 aa)
fbxw12Si:ch73-142c19.1. (474 aa)
CLSPNClaspin. (1288 aa)
ercc6Excision repair cross-complementation group 6. (1443 aa)
ENSMAMP00000006478STN1 subunit of CST complex. (338 aa)
gtf2h1General transcription factor IIH, polypeptide 1. (549 aa)
ercc3Excision repair cross-complementation group 3. (783 aa)
ercc4Excision repair cross-complementation group 4. (900 aa)
rfc5Replication factor C (activator 1) 5. (335 aa)
ENSMAMP00000007615Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (173 aa)
ddb2Damage-specific DNA binding protein 2. (527 aa)
meiobMethionine sulfoxide reductase B1b. (469 aa)
pole2DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (528 aa)
rfc4Replication factor C (activator 1) 4. (376 aa)
rbx1Ring-box 1, E3 ubiquitin protein ligase. (108 aa)
ercc1Excision repair cross-complementation group 1. (352 aa)
rpa2Replication protein A2. (272 aa)
pold2Polymerase (DNA directed), delta 2, regulatory subunit. (470 aa)
GTF2H5General transcription factor IIH, polypeptide 5. (71 aa)
ENSMAMP00000011577PRKR interacting protein 1. (181 aa)
LOC113137302General transcription factor IIH subunit 5. (71 aa)
LOC113137302-2General transcription factor IIH subunit 5. (71 aa)
ENSMAMP00000013291DNA ligase. (987 aa)
LOC113144387Centrin, EF-hand protein, 2. (174 aa)
ENSMAMP00000015134Basic, immunoglobulin-like variable motif containing. (481 aa)
ddx11DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11. (888 aa)
pold3Polymerase (DNA-directed), delta 3, accessory subunit. (441 aa)
ccnhCyclin H; Belongs to the cyclin family. (326 aa)
cdk20Cyclin-dependent kinase 20; Belongs to the protein kinase superfamily. (344 aa)
ENSMAMP00000018805Calcium binding protein 5a. (184 aa)
ENSMAMP00000018993ATPase_AAA_core domain-containing protein. (157 aa)
ENSMAMP00000019030ATPase_AAA_core domain-containing protein. (97 aa)
ENSMAMP00000019064ATPase_AAA_core domain-containing protein. (146 aa)
RFC2Replication factor C (activator 1) 2. (359 aa)
cdk7Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily. (343 aa)
LOC113137952Zinc finger protein 609b. (1388 aa)
ENSMAMP00000019950Chromatin accessibility complex subunit 1. (119 aa)
RAD23BRAD23 homolog B, nucleotide excision repair protein. (386 aa)
ddb1Damage-specific DNA binding protein 1. (1140 aa)
ENSMAMP00000021732Replication factor C (activator 1) 3. (423 aa)
LOC113132699C2H2-type domain-containing protein. (1326 aa)
poleDNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2295 aa)
pcnaProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (260 aa)
LOC113144354Centrin 4. (171 aa)
ENSMAMP00000022904Xeroderma pigmentosum, complementation group A. (277 aa)
rad23aRAD23 homolog A, nucleotide excision repair protein a. (375 aa)
ENSMAMP00000023641Xeroderma pigmentosum, complementation group C. (870 aa)
ercc2Excision repair cross-complementation group 2. (760 aa)
LOC113132996General transcription factor IIH subunit. (392 aa)
pole3Polymerase (DNA directed), epsilon 3 (p17 subunit). (153 aa)
rpa1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (600 aa)
gtf2h3General transcription factor IIH, polypeptide 3. (334 aa)
Your Current Organism:
Mastacembelus armatus
NCBI taxonomy Id: 205130
Other names: M. armatus, Macrognathus armatus, zig-zag eel
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