STRINGSTRING
Psyr_0135 Psyr_0135 Psyr_0136 Psyr_0136 Psyr_0137 Psyr_0137 Psyr_0138 Psyr_0138 recG recG Psyr_0202 Psyr_0202 Psyr_0203 Psyr_0203 Psyr_0204 Psyr_0204 Psyr_0205 Psyr_0205 Psyr_0206 Psyr_0206 Psyr_0306 Psyr_0306 dksA dksA Psyr_0874 Psyr_0874 Psyr_0875 Psyr_0875 Psyr_0876 Psyr_0876 Psyr_0877 Psyr_0877 Psyr_0878 Psyr_0878 trmJ trmJ Psyr_1407 Psyr_1407 ruvC ruvC ruvA ruvA ruvB ruvB tolQ tolQ tolR tolR Psyr_1414 Psyr_1414 tolB tolB pal pal cpoB cpoB Psyr_1750 Psyr_1750 Psyr_1751 Psyr_1751 Psyr_1904 Psyr_1904 lolD lolD Psyr_1906 Psyr_1906 Psyr_2287 Psyr_2287 Psyr_2288 Psyr_2288 Psyr_2289 Psyr_2289 Psyr_2290 Psyr_2290 Psyr_2892 Psyr_2892 Psyr_3124 Psyr_3124 lolA lolA Psyr_3769 Psyr_3769 bamA-2 bamA-2 Psyr_4480 Psyr_4480 Psyr_4481 Psyr_4481 Psyr_4482 Psyr_4482 Psyr_4483 Psyr_4483 Psyr_4496 Psyr_4496 Psyr_4497 Psyr_4497 Psyr_4498 Psyr_4498 Psyr_4826 Psyr_4826
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Psyr_0135Outer membrane transport energization protein TonB; TC 2.C.1.1.1. (274 aa)
Psyr_0136Outer membrane transport energization protein ExbB; TC 2.C.1.1.1. (235 aa)
Psyr_0137Outer membrane transport energization protein ExbD; TC 2.C.1.1.1. (133 aa)
Psyr_0138TonB-dependent receptor:TonB-dependent receptor. (904 aa)
recGATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. (691 aa)
Psyr_0202Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (307 aa)
Psyr_0203Outer membrane transport energization protein TonB; TC 2.C.1.1.1. (248 aa)
Psyr_0204Outer membrane transport energization protein ExbD; TC 2.C.1.1.1. (141 aa)
Psyr_0205Outer membrane transport energization protein ExbB; TC 2.C.1.1.1. (320 aa)
Psyr_0206Conserved hypothetical protein. (282 aa)
Psyr_0306TonB, C-terminal. (221 aa)
dksATranscriptional regulator, TraR/DksA family; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. Also required for regulation of fis expression. (146 aa)
Psyr_0874Outer membrane transport energization protein ExbD; TC 2.C.1.1.1. (135 aa)
Psyr_0875Outer membrane transport energization protein TonB; TC 2.C.1.1.1. (254 aa)
Psyr_0876TonB-dependent receptor:TonB-dependent receptor, C-terminal. (760 aa)
Psyr_0877Outer membrane transport energization protein ExbB; TC 2.C.1.1.1. (216 aa)
Psyr_0878Phospholipase D/Transphosphatidylase. (413 aa)
trmJRNA methyltransferase TrmH, group 1; Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA. (254 aa)
Psyr_1407Protein of unknown function DUF28. (248 aa)
ruvCHolliday junction endonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. (174 aa)
ruvAHolliday junction DNA helicase subunit RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. (202 aa)
ruvBHolliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (353 aa)
tolQCell division and transport-associated protein TolQ; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. (231 aa)
tolRCell division and transport-associated protein TolR; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. (154 aa)
Psyr_1414Cell division and transport-associated protein TolA; TC 2.C.1.2.1. (356 aa)
tolBTolB, N-terminal:TolB, N-terminal; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. (433 aa)
palOmpA/MotB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. (167 aa)
cpoBTPR repeat protein; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family. (248 aa)
Psyr_1750Bacterial nucleoid protein HU beta subunit; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. (90 aa)
Psyr_1751PpiC-type peptidyl-prolyl cis-trans isomerase. (627 aa)
Psyr_1904Protein of unknown function DUF214. (416 aa)
lolDABC transporter; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner. (232 aa)
Psyr_1906Protein of unknown function DUF214. (414 aa)
Psyr_2287Outer membrane transport energization protein TonB; TC 2.C.1.1.1. (277 aa)
Psyr_2288Outer membrane transport energization protein ExbB; TC 2.C.1.1.1. (255 aa)
Psyr_2289Outer membrane transport energization protein ExbD; TC 2.C.1.1.1. (133 aa)
Psyr_2290TonB-dependent receptor:TonB-dependent receptor. (800 aa)
Psyr_2892TonB-dependent receptor:TonB-dependent receptor. (815 aa)
Psyr_3124TonB-dependent siderophore receptor. (710 aa)
lolAOuter membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) (By similarity). (207 aa)
Psyr_3769TonB-dependent siderophore receptor. (724 aa)
bamA-2Surface antigen (D15):Surface antigen variable number; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. (790 aa)
Psyr_4480Outer membrane transport energization protein TonB; TC 2.C.1.1.1. (269 aa)
Psyr_4481Outer membrane transport energization protein ExbB; TC 2.C.1.1.1. (230 aa)
Psyr_4482Outer membrane transport energization protein ExbD; TC 2.C.1.1.1. (134 aa)
Psyr_4483TonB-dependent receptor:TonB-dependent receptor. (768 aa)
Psyr_4496Outer membrane transport energization protein TonB; TC 2.C.1.1.1. (237 aa)
Psyr_4497Outer membrane transport energization protein ExbB; TC 2.C.1.1.1. (242 aa)
Psyr_4498Outer membrane transport energization protein ExbD; TC 2.C.1.1.1. (141 aa)
Psyr_4826TonB-dependent receptor:TonB box, N-terminal. (755 aa)
Your Current Organism:
Pseudomonas syringae B728a
NCBI taxonomy Id: 205918
Other names: P. syringae pv. syringae B728a, Pseudomonas syringae pv. syringae B728a, Pseudomonas syringae pv. syringae str. B728a, Pseudomonas syringae pv. syringae strain B728a
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