STRINGSTRING
Dde_0359 Dde_0359 Dde_0360 Dde_0360 Dde_0361 Dde_0361 Dde_0362 Dde_0362 Dde_0479 Dde_0479 Dde_0480 Dde_0480 Dde_0481 Dde_0481
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Dde_0359TIGRFAM: Sialic acid O-acyltransferase, NeuD; KEGG: gur:Gura_4087 carbonic anhydrase. (213 aa)
Dde_0360PFAM: Polysaccharide biosynthesis protein CapD-like; KEGG: dsa:Desal_3620 polysaccharide biosynthesis protein CapD. (649 aa)
Dde_0361PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: dsa:Desal_3619 DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family. (383 aa)
Dde_0362PFAM: Bacterial sugar transferase; Glycosyl transferase, group 1; KEGG: dsa:Desal_3614 glycosyl transferase group 1. (598 aa)
Dde_0479PFAM: Glycosyl transferase, group 1; KEGG: rce:RC1_2537 glycosyl transferase, group 1 family protein. (366 aa)
Dde_0480PFAM: O-antigen ligase-related; KEGG: dvm:DvMF_3018 O-antigen polymerase. (452 aa)
Dde_0481TIGRFAM: Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; Undecaprenyl-phosphate galactose phosphotransferase, WbaP; KEGG: cyn:Cyan7425_4214 undecaprenyl-phosphate galactose phosphotransferase, WbaP; PFAM: Bacterial sugar transferase. (466 aa)
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.