(5 nodes) Mixed, incl. ABC-2 family transporter protein, and UDP-glycosyltransferase activity network (Streptococcus agalactiae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	cylA	cylA protein; Identified by match to PFAM protein family HMM PF00005. (309 aa)
	cylB	cylB protein. (292 aa)
	cylE	cylE protein; Similar to GP:4886777; identified by sequence similarity; putative. (667 aa)
	cylJ	cylJ protein; Similar to GP:6007854; identified by sequence similarity; putative. (403 aa)
	cylK	cylK protein; Similar to GP:6007855; identified by sequence similarity; putative. (191 aa)

Your Current Organism:

Streptococcus agalactiae

NCBI taxonomy Id: 208435
Other names: S. agalactiae 2603V/R, Streptococcus agalactiae 2603V/R, Streptococcus agalactiae str. 2603V/R

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
cylA	cylB	SAG0667	SAG0668	cylA protein; Identified by match to PFAM protein family HMM PF00005.	cylB protein.	0.974
cylA	cylE	SAG0667	SAG0669	cylA protein; Identified by match to PFAM protein family HMM PF00005.	cylE protein; Similar to GP:4886777; identified by sequence similarity; putative.	0.908
cylA	cylJ	SAG0667	SAG0672	cylA protein; Identified by match to PFAM protein family HMM PF00005.	cylJ protein; Similar to GP:6007854; identified by sequence similarity; putative.	0.908
cylA	cylK	SAG0667	SAG0673	cylA protein; Identified by match to PFAM protein family HMM PF00005.	cylK protein; Similar to GP:6007855; identified by sequence similarity; putative.	0.908
cylB	cylA	SAG0668	SAG0667	cylB protein.	cylA protein; Identified by match to PFAM protein family HMM PF00005.	0.974
cylB	cylE	SAG0668	SAG0669	cylB protein.	cylE protein; Similar to GP:4886777; identified by sequence similarity; putative.	0.908
cylB	cylJ	SAG0668	SAG0672	cylB protein.	cylJ protein; Similar to GP:6007854; identified by sequence similarity; putative.	0.909
cylB	cylK	SAG0668	SAG0673	cylB protein.	cylK protein; Similar to GP:6007855; identified by sequence similarity; putative.	0.908
cylE	cylA	SAG0669	SAG0667	cylE protein; Similar to GP:4886777; identified by sequence similarity; putative.	cylA protein; Identified by match to PFAM protein family HMM PF00005.	0.908
cylE	cylB	SAG0669	SAG0668	cylE protein; Similar to GP:4886777; identified by sequence similarity; putative.	cylB protein.	0.908
cylE	cylJ	SAG0669	SAG0672	cylE protein; Similar to GP:4886777; identified by sequence similarity; putative.	cylJ protein; Similar to GP:6007854; identified by sequence similarity; putative.	0.908
cylE	cylK	SAG0669	SAG0673	cylE protein; Similar to GP:4886777; identified by sequence similarity; putative.	cylK protein; Similar to GP:6007855; identified by sequence similarity; putative.	0.891
cylJ	cylA	SAG0672	SAG0667	cylJ protein; Similar to GP:6007854; identified by sequence similarity; putative.	cylA protein; Identified by match to PFAM protein family HMM PF00005.	0.908
cylJ	cylB	SAG0672	SAG0668	cylJ protein; Similar to GP:6007854; identified by sequence similarity; putative.	cylB protein.	0.909
cylJ	cylE	SAG0672	SAG0669	cylJ protein; Similar to GP:6007854; identified by sequence similarity; putative.	cylE protein; Similar to GP:4886777; identified by sequence similarity; putative.	0.908
cylJ	cylK	SAG0672	SAG0673	cylJ protein; Similar to GP:6007854; identified by sequence similarity; putative.	cylK protein; Similar to GP:6007855; identified by sequence similarity; putative.	0.908
cylK	cylA	SAG0673	SAG0667	cylK protein; Similar to GP:6007855; identified by sequence similarity; putative.	cylA protein; Identified by match to PFAM protein family HMM PF00005.	0.908
cylK	cylB	SAG0673	SAG0668	cylK protein; Similar to GP:6007855; identified by sequence similarity; putative.	cylB protein.	0.908
cylK	cylE	SAG0673	SAG0669	cylK protein; Similar to GP:6007855; identified by sequence similarity; putative.	cylE protein; Similar to GP:4886777; identified by sequence similarity; putative.	0.891
cylK	cylJ	SAG0673	SAG0672	cylK protein; Similar to GP:6007855; identified by sequence similarity; putative.	cylJ protein; Similar to GP:6007854; identified by sequence similarity; putative.	0.908