(16 nodes) ABC-2 transporter network (Amycolatopsis japonica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AIG77799.1	Conserved putative membrane protein. (266 aa)
	AIG72977.1	Conserved putative membrane protein. (244 aa)
	AIG73481.1	Conserved putative membrane protein. (270 aa)
	AIG73706.1	Hypothetical protein. (254 aa)
	AIG75134.1	Conserved putative membrane protein. (244 aa)
	AIG75483.1	Conserved putative membrane protein. (262 aa)
	AIG75942.1	Conserved putative membrane protein. (284 aa)
	drrB	Daunorubicin/doxorubicin resistance ABC transporter permease protein DrrB. (283 aa)
	AIG78637.1	ABC transporter. (242 aa)
	AIG78739.1	Conserved putative membrane protein. (275 aa)
	AIG78740.1	Conserved putative membrane protein. (271 aa)
	AIG79051.1	Conserved putative membrane protein. (283 aa)
	AIG79113.1	Conserved putative membrane protein. (243 aa)
	AIG79280.1	Conserved putative membrane protein. (247 aa)
	AIG80615.1	ABC transporter permease protein. (266 aa)
	AIG81093.1	ABC transporter permease protein. (267 aa)

Your Current Organism:

Amycolatopsis japonica

NCBI taxonomy Id: 208439
Other names: A. japonica, Amycolatopsis japonicum, CIP 106801, DSM 44213, JCM 10140, NRRL B-24138, strain MG417-CF17

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIG72977.1	AIG73481.1	AJAP_00190	AJAP_02775	Conserved putative membrane protein.	Conserved putative membrane protein.	0.404
AIG72977.1	AIG73706.1	AJAP_00190	AJAP_03910	Conserved putative membrane protein.	Hypothetical protein.	0.477
AIG72977.1	AIG77799.1	AJAP_00190	AJAP_24750	Conserved putative membrane protein.	Conserved putative membrane protein.	0.458
AIG72977.1	AIG78637.1	AJAP_00190	AJAP_29010	Conserved putative membrane protein.	ABC transporter.	0.440
AIG72977.1	AIG78739.1	AJAP_00190	AJAP_29530	Conserved putative membrane protein.	Conserved putative membrane protein.	0.455
AIG72977.1	AIG78740.1	AJAP_00190	AJAP_29535	Conserved putative membrane protein.	Conserved putative membrane protein.	0.450
AIG72977.1	AIG79051.1	AJAP_00190	AJAP_31145	Conserved putative membrane protein.	Conserved putative membrane protein.	0.453
AIG72977.1	drrB	AJAP_00190	AJAP_24185	Conserved putative membrane protein.	Daunorubicin/doxorubicin resistance ABC transporter permease protein DrrB.	0.450
AIG73481.1	AIG72977.1	AJAP_02775	AJAP_00190	Conserved putative membrane protein.	Conserved putative membrane protein.	0.404
AIG73481.1	AIG75942.1	AJAP_02775	AJAP_15330	Conserved putative membrane protein.	Conserved putative membrane protein.	0.461
AIG73481.1	AIG79051.1	AJAP_02775	AJAP_31145	Conserved putative membrane protein.	Conserved putative membrane protein.	0.462
AIG73481.1	AIG79113.1	AJAP_02775	AJAP_31455	Conserved putative membrane protein.	Conserved putative membrane protein.	0.482
AIG73481.1	AIG80615.1	AJAP_02775	AJAP_39165	Conserved putative membrane protein.	ABC transporter permease protein.	0.453
AIG73481.1	AIG81093.1	AJAP_02775	AJAP_41590	Conserved putative membrane protein.	ABC transporter permease protein.	0.499
AIG73481.1	drrB	AJAP_02775	AJAP_24185	Conserved putative membrane protein.	Daunorubicin/doxorubicin resistance ABC transporter permease protein DrrB.	0.505
AIG73706.1	AIG72977.1	AJAP_03910	AJAP_00190	Hypothetical protein.	Conserved putative membrane protein.	0.477
AIG73706.1	AIG75483.1	AJAP_03910	AJAP_13010	Hypothetical protein.	Conserved putative membrane protein.	0.806
AIG73706.1	AIG75942.1	AJAP_03910	AJAP_15330	Hypothetical protein.	Conserved putative membrane protein.	0.524
AIG73706.1	AIG78739.1	AJAP_03910	AJAP_29530	Hypothetical protein.	Conserved putative membrane protein.	0.449
AIG73706.1	AIG79280.1	AJAP_03910	AJAP_32330	Hypothetical protein.	Conserved putative membrane protein.	0.507