(11 nodes) Periplasmic binding protein network (Amycolatopsis japonica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AIG79106.1	Conserved putative secreted protein. (341 aa)
	AIG79101.1	Conserved putative secreted protein. (338 aa)
	xylF	Sugar ABC transporter periplasmic protein. (377 aa)
	AIG76458.1	Conserved putative secreted protein. (355 aa)
	AIG80991.1	Conserved putative secreted protein. (338 aa)
	AIG76329.1	Conserved putative membrane protein. (323 aa)
	AIG74795.1	Conserved putative secreted protein. (328 aa)
	AIG74743.1	Sugar ABC transporter substrate-binding protein. (345 aa)
	AIG74450.1	Conserved putative secreted protein. (329 aa)
	chvE	Multiple sugar-binding periplasmic receptor ChvE. (375 aa)
	AIG79337.1	Sugar ABC transporter periplasmic protein. (350 aa)

Your Current Organism:

Amycolatopsis japonica

NCBI taxonomy Id: 208439
Other names: A. japonica, Amycolatopsis japonicum, CIP 106801, DSM 44213, JCM 10140, NRRL B-24138, strain MG417-CF17

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIG74450.1	AIG74743.1	AJAP_07700	AJAP_09220	Conserved putative secreted protein.	Sugar ABC transporter substrate-binding protein.	0.928
AIG74450.1	AIG74795.1	AJAP_07700	AJAP_09480	Conserved putative secreted protein.	Conserved putative secreted protein.	0.477
AIG74450.1	AIG79337.1	AJAP_07700	AJAP_32615	Conserved putative secreted protein.	Sugar ABC transporter periplasmic protein.	0.915
AIG74450.1	xylF	AJAP_07700	AJAP_26010	Conserved putative secreted protein.	Sugar ABC transporter periplasmic protein.	0.492
AIG74743.1	AIG74450.1	AJAP_09220	AJAP_07700	Sugar ABC transporter substrate-binding protein.	Conserved putative secreted protein.	0.928
AIG74743.1	AIG76329.1	AJAP_09220	AJAP_17305	Sugar ABC transporter substrate-binding protein.	Conserved putative membrane protein.	0.641
AIG74743.1	AIG79337.1	AJAP_09220	AJAP_32615	Sugar ABC transporter substrate-binding protein.	Sugar ABC transporter periplasmic protein.	0.939
AIG74795.1	AIG74450.1	AJAP_09480	AJAP_07700	Conserved putative secreted protein.	Conserved putative secreted protein.	0.477
AIG76329.1	AIG74743.1	AJAP_17305	AJAP_09220	Conserved putative membrane protein.	Sugar ABC transporter substrate-binding protein.	0.641
AIG76329.1	AIG76458.1	AJAP_17305	AJAP_17950	Conserved putative membrane protein.	Conserved putative secreted protein.	0.912
AIG76329.1	AIG79101.1	AJAP_17305	AJAP_31395	Conserved putative membrane protein.	Conserved putative secreted protein.	0.487
AIG76329.1	chvE	AJAP_17305	AJAP_17340	Conserved putative membrane protein.	Multiple sugar-binding periplasmic receptor ChvE.	0.765
AIG76329.1	xylF	AJAP_17305	AJAP_26010	Conserved putative membrane protein.	Sugar ABC transporter periplasmic protein.	0.536
AIG76458.1	AIG76329.1	AJAP_17950	AJAP_17305	Conserved putative secreted protein.	Conserved putative membrane protein.	0.912
AIG76458.1	AIG79101.1	AJAP_17950	AJAP_31395	Conserved putative secreted protein.	Conserved putative secreted protein.	0.568
AIG79101.1	AIG76329.1	AJAP_31395	AJAP_17305	Conserved putative secreted protein.	Conserved putative membrane protein.	0.487
AIG79101.1	AIG76458.1	AJAP_31395	AJAP_17950	Conserved putative secreted protein.	Conserved putative secreted protein.	0.568
AIG79101.1	AIG80991.1	AJAP_31395	AJAP_41075	Conserved putative secreted protein.	Conserved putative secreted protein.	0.511
AIG79101.1	chvE	AJAP_31395	AJAP_17340	Conserved putative secreted protein.	Multiple sugar-binding periplasmic receptor ChvE.	0.631
AIG79101.1	xylF	AJAP_31395	AJAP_26010	Conserved putative secreted protein.	Sugar ABC transporter periplasmic protein.	0.541