STRINGSTRING
SO_0459 SO_0459 SO_1447 SO_1447 SO_1787 SO_1787 sapF sapF sapD sapD sapC sapC sapB sapB sapA sapA pspF pspF pspA pspA pspB pspB pspC pspC ycjX ycjX ycjF ycjF SO_2642 SO_2642 SO_3822 SO_3822 SO_3909 SO_3909
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SO_0459Putative ATPase DUF853 family. (493 aa)
SO_1447Retinol acyltransferase domain protein. (240 aa)
SO_1787Inner membrane protein of unknown function DUF1282. (198 aa)
sapFABC-type peptide uptake system ATPase component 2 SapF. (261 aa)
sapDABC-type peptide uptake system ATPase component 1 SapD; Belongs to the ABC transporter superfamily. (335 aa)
sapCABC-type peptide uptake system permease component 2 SapC. (296 aa)
sapBABC-type peptide uptake system permease component 1 SapB. (343 aa)
sapAABC-type peptide uptake system substrate-binding component SapA. (541 aa)
pspFSigma 54-dependent transcriptional activator of phage shock response PspF. (363 aa)
pspAPspF antagonist PspA. (227 aa)
pspBPhage shock protein B PspB. (79 aa)
pspCPhage shock protein C PspC. (128 aa)
ycjXProtein of unknown function DUF463 YcjX. (485 aa)
ycjFInner membrane protein of unknown function DUF697 YcjF. (401 aa)
SO_2642Protein of unknown function DUF1285. (163 aa)
SO_3822Transport protein DMT superfamily. (290 aa)
SO_3909Predicted membrane protein. (66 aa)
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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