(46 nodes) Mixed, incl. GID complex, and Endoplasmic reticulum tubular network organization network (Exophiala mesophila)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV10_09219	Protein YOP1. (364 aa)
	PV10_06981	Protein YIP. (288 aa)
	PV10_05241	Uncharacterized protein. (409 aa)
	PV10_02778	SCP domain-containing protein; Belongs to the CRISP family. (281 aa)
	PV10_01188	Uncharacterized protein. (378 aa)
	PV10_01378	Uncharacterized protein. (391 aa)
	PV10_07763	Uncharacterized protein. (93 aa)
	PV10_05595	Protein YOP1. (169 aa)
	PV10_05719	Uncharacterized protein. (431 aa)
	PV10_03731	Uncharacterized protein. (425 aa)
	PV10_04087	Uncharacterized protein. (624 aa)
	PV10_05055	Uncharacterized protein. (307 aa)
	PV10_02030	Uncharacterized protein. (647 aa)
	PV10_03194	Zn(2)-C6 fungal-type domain-containing protein. (499 aa)
	PV10_03628	Protein ssh4. (502 aa)
	PV10_01254	G domain-containing protein. (392 aa)
	PV10_01632	Uncharacterized protein. (283 aa)
	PV10_09019	Uncharacterized protein. (764 aa)
	PV10_09071	Fungal_trans domain-containing protein. (748 aa)
	PV10_07477	Zinc_ribbon_10 domain-containing protein. (388 aa)
	PV10_07139	Golgi apparatus membrane protein TVP23; Golgi membrane protein involved in vesicular trafficking. Belongs to the TVP23 family. (188 aa)
	B0A52_08219	Uncharacterized protein. (353 aa)
	PV10_06554	Yippee domain-containing protein. (296 aa)
	SEY1	Protein SEY1; Cooperates with the reticulon proteins and tubule-shaping DP1 family proteins to generate and maintain the structure of the tubular endoplasmic reticulum network. Has GTPase activity, which is required for its function in ER organization; Belongs to the TRAFAC class dynamin-like GTPase superfamily. GB1/RHD3-type GTPase family. RHD3 subfamily. (888 aa)
	PV10_03707	SCP domain-containing protein; Belongs to the CRISP family. (316 aa)
	PV10_06248	Uncharacterized protein. (115 aa)
	PV10_04597	Uncharacterized protein. (288 aa)
	PV10_03966	Zn(2)-C6 fungal-type domain-containing protein. (727 aa)
	PV10_04023	SCP domain-containing protein; Belongs to the CRISP family. (357 aa)
	PV10_05056	Radical_SAM domain-containing protein. (360 aa)
	PV10_01981	Uncharacterized protein. (1360 aa)
	PV10_04739	SCP domain-containing protein; Belongs to the CRISP family. (537 aa)
	PV10_02571	Reticulon-like protein. (382 aa)
	PV10_03403	Senescence domain-containing protein. (519 aa)
	PV10_03423	Uncharacterized protein. (678 aa)
	PV10_00016	Uncharacterized protein. (418 aa)
	PV10_08075	Uncharacterized protein. (416 aa)
	PV10_08079	Uncharacterized protein. (561 aa)
	PV10_00175	Uncharacterized protein. (155 aa)
	PV10_00691	Uncharacterized protein. (412 aa)
	B0A52_06168	Protein yippee-like; Belongs to the yippee family. (110 aa)
	PV10_07019	Uncharacterized protein. (308 aa)
	PV10_01145	Uncharacterized protein. (399 aa)
	PV10_00783	Uncharacterized protein. (437 aa)
	PV10_00817	Uncharacterized protein. (1118 aa)
	PV10_01658	Protein YIP. (284 aa)

Your Current Organism:

Exophiala mesophila

NCBI taxonomy Id: 212818
Other names: CBS 402.95, E. mesophila

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B0A52_06168	PV10_00691	A0A0D1ZRJ9	A0A0D1ZQI7	Protein yippee-like; Belongs to the yippee family.	Uncharacterized protein.	0.656
B0A52_06168	PV10_01145	A0A0D1ZRJ9	A0A0D1ZTX7	Protein yippee-like; Belongs to the yippee family.	Uncharacterized protein.	0.464
B0A52_06168	PV10_03423	A0A0D1ZRJ9	A0A0D1ZMD9	Protein yippee-like; Belongs to the yippee family.	Uncharacterized protein.	0.698
B0A52_06168	PV10_03628	A0A0D1ZRJ9	A0A0D1Y5Y2	Protein yippee-like; Belongs to the yippee family.	Protein ssh4.	0.465
B0A52_06168	PV10_03731	A0A0D1ZRJ9	A0A0D1XW40	Protein yippee-like; Belongs to the yippee family.	Uncharacterized protein.	0.636
B0A52_06168	PV10_04087	A0A0D1ZRJ9	A0A0D1XX55	Protein yippee-like; Belongs to the yippee family.	Uncharacterized protein.	0.705
B0A52_06168	PV10_04597	A0A0D1ZRJ9	A0A0D1ZF58	Protein yippee-like; Belongs to the yippee family.	Uncharacterized protein.	0.480
B0A52_08219	PV10_01658	A0A0D1Z8Q0	A0A0D2AGD0	Uncharacterized protein.	Protein YIP.	0.525
B0A52_08219	PV10_02030	A0A0D1Z8Q0	A0A0D1Y144	Uncharacterized protein.	Uncharacterized protein.	0.794
B0A52_08219	PV10_05595	A0A0D1Z8Q0	A0A0D1XSD7	Uncharacterized protein.	Protein YOP1.	0.445
B0A52_08219	PV10_05719	A0A0D1Z8Q0	A0A0D1XSM7	Uncharacterized protein.	Uncharacterized protein.	0.603
B0A52_08219	PV10_06248	A0A0D1Z8Q0	A0A0D1ZCQ8	Uncharacterized protein.	Uncharacterized protein.	0.603
B0A52_08219	PV10_06981	A0A0D1Z8Q0	A0A0D1WKU8	Uncharacterized protein.	Protein YIP.	0.403
B0A52_08219	PV10_07019	A0A0D1Z8Q0	A0A0D1ZS76	Uncharacterized protein.	Uncharacterized protein.	0.944
B0A52_08219	PV10_07763	A0A0D1Z8Q0	A0A0D1XQS4	Uncharacterized protein.	Uncharacterized protein.	0.574
PV10_00175	PV10_07763	A0A0D1ZNS0	A0A0D1XQS4	Uncharacterized protein.	Uncharacterized protein.	0.400
PV10_00691	B0A52_06168	A0A0D1ZQI7	A0A0D1ZRJ9	Uncharacterized protein.	Protein yippee-like; Belongs to the yippee family.	0.656
PV10_00691	PV10_01145	A0A0D1ZQI7	A0A0D1ZTX7	Uncharacterized protein.	Uncharacterized protein.	0.805
PV10_00691	PV10_03423	A0A0D1ZQI7	A0A0D1ZMD9	Uncharacterized protein.	Uncharacterized protein.	0.956
PV10_00691	PV10_03628	A0A0D1ZQI7	A0A0D1Y5Y2	Uncharacterized protein.	Protein ssh4.	0.805