(6 nodes) RNA polymerase III complex network (Exophiala mesophila)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV10_06381	DNA-directed RNA polymerase. (196 aa)
	PV10_04135	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (567 aa)
	PV10_04587	Uncharacterized protein. (567 aa)
	PV10_03511	Uncharacterized protein. (453 aa)
	PV10_02872	Uncharacterized protein. (199 aa)
	PV10_05062	Uncharacterized protein. (363 aa)

Your Current Organism:

Exophiala mesophila

NCBI taxonomy Id: 212818
Other names: CBS 402.95, E. mesophila

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV10_02872	PV10_03511	A0A0D1ZKM5	A0A0D1Y5E8	Uncharacterized protein.	Uncharacterized protein.	0.996
PV10_02872	PV10_04135	A0A0D1ZKM5	A0A0D1XXB2	Uncharacterized protein.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.994
PV10_02872	PV10_04587	A0A0D1ZKM5	A0A0D1XYQ2	Uncharacterized protein.	Uncharacterized protein.	0.995
PV10_02872	PV10_05062	A0A0D1ZKM5	A0A0D2A4I4	Uncharacterized protein.	Uncharacterized protein.	0.996
PV10_02872	PV10_06381	A0A0D1ZKM5	A0A0D1WRU2	Uncharacterized protein.	DNA-directed RNA polymerase.	0.999
PV10_03511	PV10_02872	A0A0D1Y5E8	A0A0D1ZKM5	Uncharacterized protein.	Uncharacterized protein.	0.996
PV10_03511	PV10_04135	A0A0D1Y5E8	A0A0D1XXB2	Uncharacterized protein.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
PV10_03511	PV10_04587	A0A0D1Y5E8	A0A0D1XYQ2	Uncharacterized protein.	Uncharacterized protein.	0.997
PV10_03511	PV10_05062	A0A0D1Y5E8	A0A0D2A4I4	Uncharacterized protein.	Uncharacterized protein.	0.997
PV10_03511	PV10_06381	A0A0D1Y5E8	A0A0D1WRU2	Uncharacterized protein.	DNA-directed RNA polymerase.	0.998
PV10_04135	PV10_02872	A0A0D1XXB2	A0A0D1ZKM5	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.994
PV10_04135	PV10_03511	A0A0D1XXB2	A0A0D1Y5E8	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.999
PV10_04135	PV10_04587	A0A0D1XXB2	A0A0D1XYQ2	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.997
PV10_04135	PV10_05062	A0A0D1XXB2	A0A0D2A4I4	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.997
PV10_04135	PV10_06381	A0A0D1XXB2	A0A0D1WRU2	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase.	0.997
PV10_04587	PV10_02872	A0A0D1XYQ2	A0A0D1ZKM5	Uncharacterized protein.	Uncharacterized protein.	0.995
PV10_04587	PV10_03511	A0A0D1XYQ2	A0A0D1Y5E8	Uncharacterized protein.	Uncharacterized protein.	0.997
PV10_04587	PV10_04135	A0A0D1XYQ2	A0A0D1XXB2	Uncharacterized protein.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.997
PV10_04587	PV10_05062	A0A0D1XYQ2	A0A0D2A4I4	Uncharacterized protein.	Uncharacterized protein.	0.999
PV10_04587	PV10_06381	A0A0D1XYQ2	A0A0D1WRU2	Uncharacterized protein.	DNA-directed RNA polymerase.	0.996