15 items (Exophiala mesophila) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV10_07531	CID domain-containing protein. (502 aa)
	B0A52_06559	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family. (126 aa)
	PV10_08535	Uncharacterized protein. (487 aa)
	PV10_05811	Uncharacterized protein. (1242 aa)
	PV10_06236	Transcription elongation factor S-II, variant. (306 aa)
	PV10_04433	DUF3591 domain-containing protein. (1125 aa)
	PV10_02580	Uncharacterized protein. (621 aa)
	PV10_00274	Plus3 domain-containing protein. (606 aa)
	PV10_06639	mRNA-capping enzyme subunit alpha; Second step of mRNA capping. Transfer of the GMP moiety of GTP to the 5'-end of RNA via an enzyme-GMP covalent reaction intermediate; Belongs to the eukaryotic GTase family. (427 aa)
	PV10_07024	Uncharacterized protein. (556 aa)
	PV10_01196	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (705 aa)
	PV10_05344	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (513 aa)
	PV10_06700	TFIIS N-terminal domain-containing protein. (401 aa)
	PV10_09170	CID domain-containing protein. (657 aa)
	PV10_06913	CDC73_C domain-containing protein. (446 aa)

Your Current Organism:

Exophiala mesophila

NCBI taxonomy Id: 212818
Other names: CBS 402.95, E. mesophila

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B0A52_06559	PV10_00274	A0A0D1WPH4	A0A0D1Y6N2	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	Plus3 domain-containing protein.	0.733
B0A52_06559	PV10_02580	A0A0D1WPH4	A0A0D1Y2N7	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	Uncharacterized protein.	0.603
B0A52_06559	PV10_05811	A0A0D1WPH4	A0A0D1XSY4	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	Uncharacterized protein.	0.727
B0A52_06559	PV10_06236	A0A0D1WPH4	A0A0D1XU54	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	Transcription elongation factor S-II, variant.	0.548
B0A52_06559	PV10_06700	A0A0D1WPH4	A0A0D1ZZH2	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	TFIIS N-terminal domain-containing protein.	0.860
B0A52_06559	PV10_06913	A0A0D1WPH4	A0A0D1WKQ9	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	CDC73_C domain-containing protein.	0.857
B0A52_06559	PV10_07024	A0A0D1WPH4	A0A0D1ZS80	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	Uncharacterized protein.	0.620
B0A52_06559	PV10_08535	A0A0D1WPH4	A0A0D1XL37	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	Uncharacterized protein.	0.904
PV10_00274	B0A52_06559	A0A0D1Y6N2	A0A0D1WPH4	Plus3 domain-containing protein.	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	0.733
PV10_00274	PV10_02580	A0A0D1Y6N2	A0A0D1Y2N7	Plus3 domain-containing protein.	Uncharacterized protein.	0.956
PV10_00274	PV10_05811	A0A0D1Y6N2	A0A0D1XSY4	Plus3 domain-containing protein.	Uncharacterized protein.	0.996
PV10_00274	PV10_06236	A0A0D1Y6N2	A0A0D1XU54	Plus3 domain-containing protein.	Transcription elongation factor S-II, variant.	0.850
PV10_00274	PV10_06700	A0A0D1Y6N2	A0A0D1ZZH2	Plus3 domain-containing protein.	TFIIS N-terminal domain-containing protein.	0.849
PV10_00274	PV10_06913	A0A0D1Y6N2	A0A0D1WKQ9	Plus3 domain-containing protein.	CDC73_C domain-containing protein.	0.995
PV10_00274	PV10_07024	A0A0D1Y6N2	A0A0D1ZS80	Plus3 domain-containing protein.	Uncharacterized protein.	0.996
PV10_00274	PV10_08535	A0A0D1Y6N2	A0A0D1XL37	Plus3 domain-containing protein.	Uncharacterized protein.	0.999
PV10_01196	PV10_04433	A0A0D1ZU44	A0A0D1XY87	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	DUF3591 domain-containing protein.	0.960
PV10_01196	PV10_06236	A0A0D1ZU44	A0A0D1XU54	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Transcription elongation factor S-II, variant.	0.943
PV10_01196	PV10_07024	A0A0D1ZU44	A0A0D1ZS80	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Uncharacterized protein.	0.435
PV10_01196	PV10_09170	A0A0D1ZU44	A0A0D1WGU8	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	CID domain-containing protein.	0.658