STRINGSTRING
CLP1 CLP1 PV10_01080 PV10_01080 PV10_06287 PV10_06287 B0A52_01677 B0A52_01677 PV10_01138 PV10_01138 PV10_09170 PV10_09170 PV10_07526 PV10_07526 PV10_07804 PV10_07804 PV10_04890 PV10_04890 PV10_07418 PV10_07418 PV10_06533 PV10_06533 PV10_04170 PV10_04170 PV10_06130 PV10_06130 PV10_06549 PV10_06549 PV10_04995 PV10_04995
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
CLP1mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation. (506 aa)
PV10_01080Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (607 aa)
PV10_06287DUF3453 domain-containing protein. (740 aa)
B0A52_01677Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (322 aa)
PV10_01138Uncharacterized protein. (859 aa)
PV10_09170CID domain-containing protein. (657 aa)
PV10_07526RRM domain-containing protein. (287 aa)
PV10_07804Uncharacterized protein. (240 aa)
PV10_04890Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (269 aa)
PV10_07418WD_REPEATS_REGION domain-containing protein. (658 aa)
PV10_06533Uncharacterized protein. (530 aa)
PV10_04170WD_REPEATS_REGION domain-containing protein. (354 aa)
PV10_06130Cleavage and polyadenylation specificity factor subunit 2. (946 aa)
PV10_06549Uncharacterized protein. (707 aa)
PV10_04995Fip1 domain-containing protein. (345 aa)
Your Current Organism:
Exophiala mesophila
NCBI taxonomy Id: 212818
Other names: CBS 402.95, E. mesophila
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