20 items (Exophiala mesophila) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV10_06927	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine. (1078 aa)
	PV10_04413	Amine oxidase. (498 aa)
	PV10_04316	Glutamine amidotransferase type-2 domain-containing protein. (2135 aa)
	PV10_04409	NAD-specific glutamate dehydrogenase; NAD(+)-dependent glutamate dehydrogenase which degrades glutamate to ammonia and alpha-ketoglutarate. Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (1069 aa)
	PV10_03984	DAO domain-containing protein. (354 aa)
	PV10_06165	DAO domain-containing protein. (362 aa)
	PV10_02046	Uncharacterized protein. (657 aa)
	PV10_00544	Uncharacterized protein. (1601 aa)
	PV10_05028	Pyridoxamine 5'-phosphate oxidase. (297 aa)
	PV10_03855	Uncharacterized protein. (265 aa)
	PV10_08144	Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (457 aa)
	PV10_04415	Amine oxidase. (497 aa)
	PV10_05590	Amine oxidase. (512 aa)
	PV10_07708	Amine oxidase. (602 aa)
	PV10_01457	Amine oxidase. (493 aa)
	PV10_07509	DAO domain-containing protein. (356 aa)
	PV10_07617	Amine oxidase. (491 aa)
	PV10_06051	Amine oxidase. (500 aa)
	PV10_05322	Pyridox_oxase_2 domain-containing protein. (294 aa)
	PV10_07404	Amine oxidase. (487 aa)

Your Current Organism:

Exophiala mesophila

NCBI taxonomy Id: 212818
Other names: CBS 402.95, E. mesophila

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV10_02046	PV10_06927	A0A0D1ZI08	A0A0D1Z6N7	Uncharacterized protein.	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	0.537
PV10_03984	PV10_06927	A0A0D1ZDD4	A0A0D1Z6N7	DAO domain-containing protein.	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	0.537
PV10_04316	PV10_04409	A0A0D1XXY6	A0A0D1ZEM6	Glutamine amidotransferase type-2 domain-containing protein.	NAD-specific glutamate dehydrogenase; NAD(+)-dependent glutamate dehydrogenase which degrades glutamate to ammonia and alpha-ketoglutarate. Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.980
PV10_04316	PV10_06927	A0A0D1XXY6	A0A0D1Z6N7	Glutamine amidotransferase type-2 domain-containing protein.	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	0.894
PV10_04316	PV10_08144	A0A0D1XXY6	A0A0D1XJT8	Glutamine amidotransferase type-2 domain-containing protein.	Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.983
PV10_04409	PV10_04316	A0A0D1ZEM6	A0A0D1XXY6	NAD-specific glutamate dehydrogenase; NAD(+)-dependent glutamate dehydrogenase which degrades glutamate to ammonia and alpha-ketoglutarate. Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Glutamine amidotransferase type-2 domain-containing protein.	0.980
PV10_04409	PV10_06927	A0A0D1ZEM6	A0A0D1Z6N7	NAD-specific glutamate dehydrogenase; NAD(+)-dependent glutamate dehydrogenase which degrades glutamate to ammonia and alpha-ketoglutarate. Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	0.843
PV10_04409	PV10_08144	A0A0D1ZEM6	A0A0D1XJT8	NAD-specific glutamate dehydrogenase; NAD(+)-dependent glutamate dehydrogenase which degrades glutamate to ammonia and alpha-ketoglutarate. Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.901
PV10_05028	PV10_05322	A0A0D1ZIT2	A0A0D1Z9J8	Pyridoxamine 5'-phosphate oxidase.	Pyridox_oxase_2 domain-containing protein.	0.859
PV10_05028	PV10_06927	A0A0D1ZIT2	A0A0D1Z6N7	Pyridoxamine 5'-phosphate oxidase.	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	0.428
PV10_05322	PV10_05028	A0A0D1Z9J8	A0A0D1ZIT2	Pyridox_oxase_2 domain-containing protein.	Pyridoxamine 5'-phosphate oxidase.	0.859
PV10_06165	PV10_06927	A0A0D1ZCJ0	A0A0D1Z6N7	DAO domain-containing protein.	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	0.537
PV10_06165	PV10_07509	A0A0D1ZCJ0	A0A0D1ZTQ1	DAO domain-containing protein.	DAO domain-containing protein.	0.552
PV10_06927	PV10_02046	A0A0D1Z6N7	A0A0D1ZI08	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	Uncharacterized protein.	0.537
PV10_06927	PV10_03984	A0A0D1Z6N7	A0A0D1ZDD4	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	DAO domain-containing protein.	0.537
PV10_06927	PV10_04316	A0A0D1Z6N7	A0A0D1XXY6	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	Glutamine amidotransferase type-2 domain-containing protein.	0.894
PV10_06927	PV10_04409	A0A0D1Z6N7	A0A0D1ZEM6	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	NAD-specific glutamate dehydrogenase; NAD(+)-dependent glutamate dehydrogenase which degrades glutamate to ammonia and alpha-ketoglutarate. Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.843
PV10_06927	PV10_05028	A0A0D1Z6N7	A0A0D1ZIT2	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	Pyridoxamine 5'-phosphate oxidase.	0.428
PV10_06927	PV10_06165	A0A0D1Z6N7	A0A0D1ZCJ0	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	DAO domain-containing protein.	0.537
PV10_06927	PV10_07509	A0A0D1Z6N7	A0A0D1ZTQ1	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	DAO domain-containing protein.	0.771