STRINGSTRING
PV10_01126 PV10_01126 PV10_02508 PV10_02508 PV10_08012 PV10_08012 PV10_07460 PV10_07460 PV10_06548 PV10_06548 B0A52_01428 B0A52_01428 B0A52_09991 B0A52_09991 LSM4 LSM4 LSM8 LSM8 LSM3 LSM3 PV10_07861 PV10_07861 PV10_03578 PV10_03578 PV10_03505 PV10_03505 PV10_06286 PV10_06286 B0A52_08158 B0A52_08158 B0A52_05389 B0A52_05389 LSM5 LSM5 B0A52_07148 B0A52_07148 PV10_01325 PV10_01325 PV10_06919 PV10_06919 PV10_06654 PV10_06654 PV10_03701 PV10_03701 PV10_02680 PV10_02680
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PV10_01126Uncharacterized protein. (386 aa)
PV10_02508C2H2-type domain-containing protein. (216 aa)
PV10_08012Nop domain-containing protein. (602 aa)
PV10_07460Uncharacterized protein. (2229 aa)
PV10_06548Uncharacterized protein. (983 aa)
B0A52_01428Small nuclear ribonucleoprotein Sm D2. (114 aa)
B0A52_09991Sm domain-containing protein. (223 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (127 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
PV10_07861Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (132 aa)
PV10_03578Pre-mRNA-processing-splicing factor 8, variant. (2356 aa)
PV10_03505Sm domain-containing protein. (140 aa)
PV10_06286WD_REPEATS_REGION domain-containing protein. (519 aa)
B0A52_08158Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
B0A52_05389Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family. (143 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (84 aa)
B0A52_07148U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
PV10_01325Uncharacterized protein. (379 aa)
PV10_06919Small nuclear ribonucleoprotein G. (81 aa)
PV10_06654Tr-type G domain-containing protein. (982 aa)
PV10_03701Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (125 aa)
PV10_02680Uncharacterized protein. (578 aa)
Your Current Organism:
Exophiala mesophila
NCBI taxonomy Id: 212818
Other names: CBS 402.95, E. mesophila
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