(9 nodes) Nuclear-transcribed mRNA catabolic process, 3-5 exonucleolytic nonsense-mediated decay network (Exophiala mesophila)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV10_03579	RNase_PH domain-containing protein. (258 aa)
	PV10_08668	WD_REPEATS_REGION domain-containing protein. (316 aa)
	PV10_01573	RNase_PH domain-containing protein. (361 aa)
	PV10_00903	Uncharacterized protein. (1162 aa)
	PV10_00250	Uncharacterized protein. (1400 aa)
	PV10_02813	Uncharacterized protein. (294 aa)
	PV10_05756	RNase_PH domain-containing protein. (367 aa)
	PV10_01420	RNase_PH domain-containing protein. (272 aa)
	PV10_01723	Uncharacterized protein. (1247 aa)

Your Current Organism:

Exophiala mesophila

NCBI taxonomy Id: 212818
Other names: CBS 402.95, E. mesophila

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV10_00250	PV10_01420	A0A0D1ZQX0	A0A0D1YAN9	Uncharacterized protein.	RNase_PH domain-containing protein.	0.849
PV10_00250	PV10_01573	A0A0D1ZQX0	A0A0D1ZTF9	Uncharacterized protein.	RNase_PH domain-containing protein.	0.818
PV10_00250	PV10_01723	A0A0D1ZQX0	A0A0D1X809	Uncharacterized protein.	Uncharacterized protein.	0.999
PV10_00250	PV10_02813	A0A0D1ZQX0	A0A0D1ZKI4	Uncharacterized protein.	Uncharacterized protein.	0.882
PV10_00250	PV10_03579	A0A0D1ZQX0	A0A0D1X2L3	Uncharacterized protein.	RNase_PH domain-containing protein.	0.848
PV10_00250	PV10_05756	A0A0D1ZQX0	A0A0D1Z8Y9	Uncharacterized protein.	RNase_PH domain-containing protein.	0.750
PV10_00250	PV10_08668	A0A0D1ZQX0	A0A0D1WJM4	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.999
PV10_01420	PV10_00250	A0A0D1YAN9	A0A0D1ZQX0	RNase_PH domain-containing protein.	Uncharacterized protein.	0.849
PV10_01420	PV10_01573	A0A0D1YAN9	A0A0D1ZTF9	RNase_PH domain-containing protein.	RNase_PH domain-containing protein.	0.999
PV10_01420	PV10_01723	A0A0D1YAN9	A0A0D1X809	RNase_PH domain-containing protein.	Uncharacterized protein.	0.926
PV10_01420	PV10_02813	A0A0D1YAN9	A0A0D1ZKI4	RNase_PH domain-containing protein.	Uncharacterized protein.	0.999
PV10_01420	PV10_03579	A0A0D1YAN9	A0A0D1X2L3	RNase_PH domain-containing protein.	RNase_PH domain-containing protein.	0.999
PV10_01420	PV10_05756	A0A0D1YAN9	A0A0D1Z8Y9	RNase_PH domain-containing protein.	RNase_PH domain-containing protein.	0.999
PV10_01420	PV10_08668	A0A0D1YAN9	A0A0D1WJM4	RNase_PH domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.767
PV10_01573	PV10_00250	A0A0D1ZTF9	A0A0D1ZQX0	RNase_PH domain-containing protein.	Uncharacterized protein.	0.818
PV10_01573	PV10_01420	A0A0D1ZTF9	A0A0D1YAN9	RNase_PH domain-containing protein.	RNase_PH domain-containing protein.	0.999
PV10_01573	PV10_01723	A0A0D1ZTF9	A0A0D1X809	RNase_PH domain-containing protein.	Uncharacterized protein.	0.951
PV10_01573	PV10_02813	A0A0D1ZTF9	A0A0D1ZKI4	RNase_PH domain-containing protein.	Uncharacterized protein.	0.999
PV10_01573	PV10_03579	A0A0D1ZTF9	A0A0D1X2L3	RNase_PH domain-containing protein.	RNase_PH domain-containing protein.	0.998
PV10_01573	PV10_05756	A0A0D1ZTF9	A0A0D1Z8Y9	RNase_PH domain-containing protein.	RNase_PH domain-containing protein.	0.999