STRINGSTRING
PV10_08011 PV10_08011 PV10_01265 PV10_01265 PV10_08116 PV10_08116 PV10_08223 PV10_08223 PV10_02944 PV10_02944 PV10_02013 PV10_02013 PV10_05389 PV10_05389 PV10_07725 PV10_07725 PV10_06919 PV10_06919 PV10_07523 PV10_07523 PV10_04877 PV10_04877 B0A52_01428 B0A52_01428 B0A52_09991 B0A52_09991 PV10_01232 PV10_01232 PV10_08998 PV10_08998 PV10_08258 PV10_08258 PV10_03505 PV10_03505 PV10_07861 PV10_07861 PV10_03028 PV10_03028 PV10_00085 PV10_00085 PV10_07318 PV10_07318 PV10_04520 PV10_04520 B0A52_08158 B0A52_08158 PV10_02820 PV10_02820
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PV10_08011Pre-mRNA-splicing factor clf1. (675 aa)
PV10_01265Branchpoint-bridging protein. (587 aa)
PV10_08116Uncharacterized protein. (770 aa)
PV10_08223Uncharacterized protein. (1189 aa)
PV10_02944PSP domain-containing protein. (576 aa)
PV10_02013Uncharacterized protein. (560 aa)
PV10_05389Uncharacterized protein. (336 aa)
PV10_07725Uncharacterized protein. (479 aa)
PV10_06919Small nuclear ribonucleoprotein G. (81 aa)
PV10_07523U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (571 aa)
PV10_04877Uncharacterized protein. (1753 aa)
B0A52_01428Small nuclear ribonucleoprotein Sm D2. (114 aa)
B0A52_09991Sm domain-containing protein. (223 aa)
PV10_01232Matrin-type domain-containing protein. (520 aa)
PV10_08998Uncharacterized protein. (543 aa)
PV10_08258Matrin-type domain-containing protein. (238 aa)
PV10_03505Sm domain-containing protein. (140 aa)
PV10_07861Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (132 aa)
PV10_03028RRM domain-containing protein. (200 aa)
PV10_00085SF3b1 domain-containing protein. (1213 aa)
PV10_07318Uncharacterized protein. (768 aa)
PV10_04520RRM domain-containing protein. (401 aa)
B0A52_08158Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
PV10_02820Uncharacterized protein. (311 aa)
Your Current Organism:
Exophiala mesophila
NCBI taxonomy Id: 212818
Other names: CBS 402.95, E. mesophila
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